A citation-based method for searching scientific literature

Eva Petermann, Li Lan, Lee Zou. Nat Rev Mol Cell Biol 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Yin Yang 1 contains G-quadruplex structures in its promoter and 5'-UTR and its expression is modulated by G4 resolvase 1.
Weiwei Huang, Philip J Smaldino, Qiang Zhang, Lance D Miller, Paul Cao, Kristin Stadelman, Meimei Wan, Banabihari Giri, Ming Lei, Yoshikuni Nagamine,[...]. Nucleic Acids Res 2012
69
100

An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES.
Mark J Morris, Yoichi Negishi, Cathy Pazsint, Joseph D Schonhoft, Soumitra Basu. J Am Chem Soc 2010
144
100

Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing.
Markus Meyer, Mireya Plass, Jorge Pérez-Valle, Eduardo Eyras, Josep Vilardell. Mol Cell 2011
72
100

Functional consequences of developmentally regulated alternative splicing.
Auinash Kalsotra, Thomas A Cooper. Nat Rev Genet 2011
439
100

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
81
100

Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences.
Josh T Cuperus, Benjamin Groves, Anna Kuchina, Alexander B Rosenberg, Nebojsa Jojic, Stanley Fields, Georg Seelig. Genome Res 2017
75
100

CADD-Splice-improving genome-wide variant effect prediction using deep learning-derived splice scores.
Philipp Rentzsch, Max Schubach, Jay Shendure, Martin Kircher. Genome Med 2021
74
100

G-Quadruplex Regulation of VEGFA mRNA Translation by RBM4.
Kangkang Niu, Xiaojuan Zhang, Qisheng Song, Qili Feng. Int J Mol Sci 2022
1
100

DEAD-box RNA helicase subunits of the Drosha complex are required for processing of rRNA and a subset of microRNAs.
Toru Fukuda, Kaoru Yamagata, Sally Fujiyama, Takahiro Matsumoto, Iori Koshida, Kimihiro Yoshimura, Masatomo Mihara, Masanori Naitou, Hideki Endoh, Takashi Nakamura,[...]. Nat Cell Biol 2007
322
100

Alternative splicing and evolution: diversification, exon definition and function.
Hadas Keren, Galit Lev-Maor, Gil Ast. Nat Rev Genet 2010
641
100

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis.
Ilias Georgakopoulos-Soares, Sandro Morganella, Naman Jain, Martin Hemberg, Serena Nik-Zainal. Genome Res 2018
44
100

The role of site accessibility in microRNA target recognition.
Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal. Nat Genet 2007
100

The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription.
Alper Akay, Tomas Di Domenico, Kin M Suen, Amena Nabih, Guillermo E Parada, Mark Larance, Ragini Medhi, Ahmet C Berkyurek, Xinlian Zhang, Christopher J Wedeles,[...]. Dev Cell 2017
38
100

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
259
100

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.
Pierre Murat, Giovanni Marsico, Barbara Herdy, Avazeh T Ghanbarian, Guillem Portella, Shankar Balasubramanian. Genome Biol 2018
64
100


Human DHX9 helicase unwinds triple-helical DNA structures.
Aklank Jain, Albino Bacolla, Prasun Chakraborty, Frank Grosse, Karen M Vasquez. Biochemistry 2010
72
100

The enigmatic helicase DHX9 and its association with the hallmarks of cancer.
Chloe Gulliver, Ralf Hoffmann, George S Baillie. Future Sci OA 2020
9
100

hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations.
Kohji Mori, Sven Lammich, Ian R A Mackenzie, Ignasi Forné, Sonja Zilow, Hans Kretzschmar, Dieter Edbauer, Jonathan Janssens, Gernot Kleinberger, Marc Cruts,[...]. Acta Neuropathol 2013
240
100

UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide.
Carmen Pérez-Calero, Aleix Bayona-Feliu, Xiaoyu Xue, Sonia I Barroso, Sergio Muñoz, Víctor M González-Basallote, Patrick Sung, Andrés Aguilera. Genes Dev 2020
34
100

Action and function of helicases on RNA G-quadruplexes.
Marco Caterino, Katrin Paeschke. Methods 2022
2
100

RNA mis-splicing in disease.
Marina M Scotti, Maurice S Swanson. Nat Rev Genet 2016
541
100

Nucleosomal elements that control the topography of the barrier to transcription.
Lacramioara Bintu, Toyotaka Ishibashi, Manchuta Dangkulwanich, Yueh-Yi Wu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante. Cell 2012
121
100



Alternative splicing modulation by G-quadruplexes.
Ilias Georgakopoulos-Soares, Guillermo E Parada, Hei Yuen Wong, Ragini Medhi, Giulia Furlan, Roberto Munita, Eric A Miska, Chun Kit Kwok, Martin Hemberg. Nat Commun 2022
2
100

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation.
Daniel Benhalevy, Sanjay K Gupta, Charles H Danan, Suman Ghosal, Hong-Wei Sun, Hinke G Kazemier, Katrin Paeschke, Markus Hafner, Stefan A Juranek. Cell Rep 2017
63
100

Structural imprints in vivo decode RNA regulatory mechanisms.
Robert C Spitale, Ryan A Flynn, Qiangfeng Cliff Zhang, Pete Crisalli, Byron Lee, Jong-Wha Jung, Hannes Y Kuchelmeister, Pedro J Batista, Eduardo A Torre, Eric T Kool,[...]. Nature 2015
411
100

Ribosome Profiling: Global Views of Translation.
Nicholas T Ingolia, Jeffrey A Hussmann, Jonathan S Weissman. Cold Spring Harb Perspect Biol 2019
94
100

Characterization of G-quadruplex antibody reveals differential specificity for G4 DNA forms.
Saniya M Javadekar, Namrata M Nilavar, Amita Paranjape, Kohal Das, Sathees C Raghavan. DNA Res 2020
4
100

DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions.
Markus Sauer, Stefan A Juranek, James Marks, Alessio De Magis, Hinke G Kazemier, Daniel Hilbig, Daniel Benhalevy, Xiantao Wang, Markus Hafner, Katrin Paeschke. Nat Commun 2019
58
100

Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation.
Assen Marintchev, Katherine A Edmonds, Boriana Marintcheva, Elthea Hendrickson, Monika Oberer, Chikako Suzuki, Barbara Herdy, Nahum Sonenberg, Gerhard Wagner. Cell 2009
171
100


A census of human RNA-binding proteins.
Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
974
100

Alternative RNA structures formed during transcription depend on elongation rate and modify RNA processing.
Tassa Saldi, Kent Riemondy, Benjamin Erickson, David L Bentley. Mol Cell 2021
15
100

Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate.
Nova Fong, Hyunmin Kim, Yu Zhou, Xiong Ji, Jinsong Qiu, Tassa Saldi, Katrina Diener, Ken Jones, Xiang-Dong Fu, David L Bentley. Genes Dev 2014
154
100


The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif.
C Schaeffer, B Bardoni, J L Mandel, B Ehresmann, C Ehresmann, H Moine. EMBO J 2001
366
100

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.
Michael C Chen, Ramreddy Tippana, Natalia A Demeshkina, Pierre Murat, Shankar Balasubramanian, Sua Myong, Adrian R Ferré-D'Amaré. Nature 2018
126
100

Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
I B Rogozin, A V Kochetov, F A Kondrashov, E V Koonin, L Milanesi. Bioinformatics 2001
112
100


G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
148
100


R-Loop-Associated Genomic Instability and Implication of WRN and WRNIP1.
Veronica Marabitti, Pasquale Valenzisi, Giorgia Lillo, Eva Malacaria, Valentina Palermo, Pietro Pichierri, Annapaola Franchitto. Int J Mol Sci 2022
1
100


Telomerase downregulation induced by the G-quadruplex ligand 12459 in A549 cells is mediated by hTERT RNA alternative splicing.
Dennis Gomez, Thibault Lemarteleur, Laurent Lacroix, Patrick Mailliet, Jean-Louis Mergny, Jean-François Riou. Nucleic Acids Res 2004
166
100

RNA structure maps across mammalian cellular compartments.
Lei Sun, Furqan M Fazal, Pan Li, James P Broughton, Byron Lee, Lei Tang, Wenze Huang, Eric T Kool, Howard Y Chang, Qiangfeng Cliff Zhang. Nat Struct Mol Biol 2019
91
100


Post-transcriptional Regulation of Nkx2-5 by RHAU in Heart Development.
Junwei Nie, Mingyang Jiang, Xiaotian Zhang, Hao Tang, Hengwei Jin, Xinyi Huang, Baiyin Yuan, Chenxi Zhang, Janice Ching Lai, Yoshikuni Nagamine,[...]. Cell Rep 2015
40
100

Regulation of gene expression by the BLM helicase correlates with the presence of G-quadruplex DNA motifs.
Giang Huong Nguyen, Weiliang Tang, Ana I Robles, Richard P Beyer, Lucas T Gray, Judith A Welsh, Aaron J Schetter, Kensuke Kumamoto, Xin Wei Wang, Ian D Hickson,[...]. Proc Natl Acad Sci U S A 2014
81
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.