A citation-based method for searching scientific literature

Panagiotis Katsonis, Kevin Wilhelm, Amanda Williams, Olivier Lichtarge. Hum Genet 2022
Times Cited: 2







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


ClinGen--the Clinical Genome Resource.
Heidi L Rehm, Jonathan S Berg, Lisa D Brooks, Carlos D Bustamante, James P Evans, Melissa J Landrum, David H Ledbetter, Donna R Maglott, Christa Lese Martin, Robert L Nussbaum,[...]. N Engl J Med 2015
640
100

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
100

SNAP: predict effect of non-synonymous polymorphisms on function.
Yana Bromberg, Burkhard Rost. Nucleic Acids Res 2007
553
100



Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities.
Marinka Zitnik, Francis Nguyen, Bo Wang, Jure Leskovec, Anna Goldenberg, Michael M Hoffman. Inf Fusion 2019
135
50

A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization.
Yao Yan, Thomas Schaffter, Timothy Bergquist, Thomas Yu, Justin Prosser, Zafer Aydin, Amhar Jabeer, Ivan Brugere, Jifan Gao, Guanhua Chen,[...]. JAMA Netw Open 2021
2
50



VIPdb, a genetic Variant Impact Predictor Database.
Zhiqiang Hu, Changhua Yu, Mabel Furutsuki, Gaia Andreoletti, Melissa Ly, Roger Hoskins, Aashish N Adhikari, Steven E Brenner. Hum Mutat 2019
14
50

Identifying Crohn's disease signal from variome analysis.
Yanran Wang, Maximilian Miller, Yuri Astrakhan, Britt-Sabina Petersen, Stefan Schreiber, Andre Franke, Yana Bromberg. Genome Med 2019
9
50

Genome privacy: challenges, technical approaches to mitigate risk, and ethical considerations in the United States.
Shuang Wang, Xiaoqian Jiang, Siddharth Singh, Rebecca Marmor, Luca Bonomi, Dov Fox, Michelle Dow, Lucila Ohno-Machado. Ann N Y Acad Sci 2017
26
50

The FoldX web server: an online force field.
Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano. Nucleic Acids Res 2005
50

Prioritizing de novo autism risk variants with calibrated gene- and variant-scoring models.
Yuxiang Jiang, Jorge Urresti, Kymberleigh A Pagel, Akula Bala Pramod, Lilia M Iakoucheva, Predrag Radivojac. Hum Genet 2022
1
100


Genomics is failing on diversity.
Alice B Popejoy, Stephanie M Fullerton. Nature 2016
723
50

Disease-associated human genetic variation through the lens of precursor and mature RNA structure.
Justin M Waldern, Jayashree Kumar, Alain Laederach. Hum Genet 2022
3
50

Opportunities and challenges for the computational interpretation of rare variation in clinically important genes.
Gregory McInnes, Andrew G Sharo, Megan L Koleske, Julia E H Brown, Matthew Norstad, Aashish N Adhikari, Sheng Wang, Steven E Brenner, Jodi Halpern, Barbara A Koenig,[...]. Am J Hum Genet 2021
13
50

The role of exome sequencing in newborn screening for inborn errors of metabolism.
Aashish N Adhikari, Renata C Gallagher, Yaqiong Wang, Robert J Currier, George Amatuni, Laia Bassaganyas, Flavia Chen, Kunal Kundu, Mark Kvale, Sean D Mooney,[...]. Nat Med 2020
55
50

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
50

Protein function in precision medicine: deep understanding with machine learning.
Burkhard Rost, Predrag Radivojac, Yana Bromberg. FEBS Lett 2016
26
50

Amino acid substitution matrices from protein blocks.
S Henikoff, J G Henikoff. Proc Natl Acad Sci U S A 1992
50

Signatures of genetic variation in human microRNAs point to processes of positive selection and population-specific disease risks.
Pablo Villegas-Mirón, Alicia Gallego, Jaume Bertranpetit, Hafid Laayouni, Yolanda Espinosa-Parrilla. Hum Genet 2022
1
100

Clinical impact of rare variants associated with inherited channelopathies: a 5-year update.
Georgia Sarquella-Brugada, Anna Fernandez-Falgueras, Sergi Cesar, Elena Arbelo, Mónica Coll, Alexandra Perez-Serra, Marta Puigmulé, Anna Iglesias, Mireia Alcalde, Marta Vallverdú-Prats,[...]. Hum Genet 2022
4
50


From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data.
Daniele Raimondi, Massimiliano Corso, Piero Fariselli, Yves Moreau. Nucleic Acids Res 2022
1
100

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure.
Emidio Capriotti, Piero Fariselli, Rita Casadio. Nucleic Acids Res 2005
976
50

Predicting embryonic aneuploidy rate in IVF patients using whole-exome sequencing.
Siqi Sun, Maximilian Miller, Yanran Wang, Katarzyna M Tyc, Xiaolong Cao, Richard T Scott, Xin Tao, Yana Bromberg, Karen Schindler, Jinchuan Xing. Hum Genet 2022
3
50

Mutational heterogeneity in cancer and the search for new cancer-associated genes.
Michael S Lawrence, Petar Stojanov, Paz Polak, Gregory V Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L Carter, Chip Stewart, Craig H Mermel, Steven A Roberts,[...]. Nature 2013
50

The distribution of fitness effects of new mutations.
Adam Eyre-Walker, Peter D Keightley. Nat Rev Genet 2007
766
50

Disease variant prediction with deep generative models of evolutionary data.
Jonathan Frazer, Pascal Notin, Mafalda Dias, Aidan Gomez, Joseph K Min, Kelly Brock, Yarin Gal, Debora S Marks. Nature 2021
50
50

Next-generation diagnostics and disease-gene discovery with the Exomiser.
Damian Smedley, Julius O B Jacobsen, Marten Jäger, Sebastian Köhler, Manuel Holtgrewe, Max Schubach, Enrico Siragusa, Tomasz Zemojtel, Orion J Buske, Nicole L Washington,[...]. Nat Protoc 2015
151
50

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0.
Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman. Bioinformatics 2009
261
50

The Sequence Ontology: a tool for the unification of genome annotations.
Karen Eilbeck, Suzanna E Lewis, Christopher J Mungall, Mark Yandell, Lincoln Stein, Richard Durbin, Michael Ashburner. Genome Biol 2005
440
50

ELASPIC web-server: proteome-wide structure-based prediction of mutation effects on protein stability and binding affinity.
Daniel K Witvliet, Alexey Strokach, Andrés Felipe Giraldo-Forero, Joan Teyra, Recep Colak, Philip M Kim. Bioinformatics 2016
35
50

Learning meaningful representations of protein sequences.
Nicki Skafte Detlefsen, Søren Hauberg, Wouter Boomsma. Nat Commun 2022
4
50

The Counteracting Effects of Demography on Functional Genomic Variation: The Roma Paradigm.
Neus Font-Porterias, Rocio Caro-Consuegra, Marcel Lucas-Sánchez, Marie Lopez, Aaron Giménez, Annabel Carballo-Mesa, Elena Bosch, Francesc Calafell, Lluís Quintana-Murci, David Comas. Mol Biol Evol 2021
6
50

Burden of rare deleterious variants in WNT signaling genes among 511 myelomeningocele patients.
Luke Hebert, Paul Hillman, Craig Baker, Michael Brown, Allison Ashley-Koch, James E Hixson, Alanna C Morrison, Hope Northrup, Kit Sing Au. PLoS One 2020
6
50

Quantifying and understanding the fitness effects of protein mutations: Laboratory versus nature.
Jeffrey I Boucher, Daniel N A Bolon, Dan S Tawfik. Protein Sci 2016
50
50

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.
Christina Curtis, Sohrab P Shah, Suet-Feung Chin, Gulisa Turashvili, Oscar M Rueda, Mark J Dunning, Doug Speed, Andy G Lynch, Shamith Samarajiwa, Yinyin Yuan,[...]. Nature 2012
50

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.
Belinda Giardine, Joseph Borg, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas,[...]. Nucleic Acids Res 2014
290
50

TAPES: A tool for assessment and prioritisation in exome studies.
Alexandre Xavier, Rodney J Scott, Bente A Talseth-Palmer. PLoS Comput Biol 2019
10
50


A systematic survey of loss-of-function variants in human protein-coding genes.
Daniel G MacArthur, Suganthi Balasubramanian, Adam Frankish, Ni Huang, James Morris, Klaudia Walter, Luke Jostins, Lukas Habegger, Joseph K Pickrell, Stephen B Montgomery,[...]. Science 2012
799
50


DVPred: a disease-specific prediction tool for variant pathogenicity classification for hearing loss.
Fengxiao Bu, Mingjun Zhong, Qinyi Chen, Yumei Wang, Xia Zhao, Qian Zhang, Xiarong Li, Kevin T Booth, Hela Azaiez, Yu Lu,[...]. Hum Genet 2022
2
50

UMD-Predictor: A High-Throughput Sequencing Compliant System for Pathogenicity Prediction of any Human cDNA Substitution.
David Salgado, Jean-Pierre Desvignes, Ghadi Rai, Arnaud Blanchard, Morgane Miltgen, Amélie Pinard, Nicolas Lévy, Gwenaëlle Collod-Béroud, Christophe Béroud. Hum Mutat 2016
86
50


HuVarBase: A human variant database with comprehensive information at gene and protein levels.
Kaliappan Ganesan, A Kulandaisamy, S Binny Priya, M Michael Gromiha. PLoS One 2019
18
50

Detection of nonneutral substitution rates on mammalian phylogenies.
Katherine S Pollard, Melissa J Hubisz, Kate R Rosenbloom, Adam Siepel. Genome Res 2010
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.