A citation-based method for searching scientific literature

Anna B Loveland, Egor Svidritskiy, Denis Susorov, Soojin Lee, Alexander Park, Sarah Zvornicanin, Gabriel Demo, Fen-Biao Gao, Andrei A Korostelev. Nat Commun 2022
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Inhibition of the interactions between eukaryotic initiation factors 4E and 4G impairs long-term associative memory consolidation but not reconsolidation.
Charles A Hoeffer, Kiriana K Cowansage, Elizabeth C Arnold, Jessica L Banko, Nathan J Moerke, Ricard Rodriguez, Enrico K Schmidt, Edvin Klosi, Michael Chorev, Richard E Lloyd,[...]. Proc Natl Acad Sci U S A 2011
75
50

Translation of upstream open reading frames in a model of neuronal differentiation.
Caitlin M Rodriguez, Sang Y Chun, Ryan E Mills, Peter K Todd. BMC Genomics 2019
18
50


Modeling key pathological features of frontotemporal dementia with C9ORF72 repeat expansion in iPSC-derived human neurons.
Sandra Almeida, Eduardo Gascon, Hélène Tran, Hsin Jung Chou, Tania F Gendron, Steven Degroot, Andrew R Tapper, Chantal Sellier, Nicolas Charlet-Berguerand, Anna Karydas,[...]. Acta Neuropathol 2013
240
50

RAN translation at C9orf72-associated repeat expansions is selectively enhanced by the integrated stress response.
Katelyn M Green, M Rebecca Glineburg, Michael G Kearse, Brittany N Flores, Alexander E Linsalata, Stephen J Fedak, Aaron C Goldstrohm, Sami J Barmada, Peter K Todd. Nat Commun 2017
104
50

Small-molecule inhibition of the interaction between the translation initiation factors eIF4E and eIF4G.
Nathan J Moerke, Huseyin Aktas, Han Chen, Sonia Cantel, Mikhail Y Reibarkh, Amr Fahmy, John D Gross, Alexei Degterev, Junying Yuan, Michael Chorev,[...]. Cell 2007
384
50

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.
Erin E Heyer, Hakan Ozadam, Emiliano P Ricci, Can Cenik, Melissa J Moore. Nucleic Acids Res 2015
33
50

Non-ATG-initiated translation directed by microsatellite expansions.
Tao Zu, Brian Gibbens, Noelle S Doty, Mário Gomes-Pereira, Aline Huguet, Matthew D Stone, Jamie Margolis, Mark Peterson, Todd W Markowski, Melissa A C Ingram,[...]. Proc Natl Acad Sci U S A 2011
578
50

CUG initiation and frameshifting enable production of dipeptide repeat proteins from ALS/FTD C9ORF72 transcripts.
Ricardos Tabet, Laure Schaeffer, Fernande Freyermuth, Melanie Jambeau, Michael Workman, Chao-Zong Lee, Chun-Chia Lin, Jie Jiang, Karen Jansen-West, Hussein Abou-Hamdan,[...]. Nat Commun 2018
75
50

CRISPR-Cas9 Screens Identify the RNA Helicase DDX3X as a Repressor of C9ORF72 (GGGGCC)n Repeat-Associated Non-AUG Translation.
Weiwei Cheng, Shaopeng Wang, Zhe Zhang, David W Morgens, Lindsey R Hayes, Soojin Lee, Bede Portz, Yongzhi Xie, Baotram V Nguyen, Michael S Haney,[...]. Neuron 2019
55
50

DAP5 promotes cap-independent translation of Bcl-2 and CDK1 to facilitate cell survival during mitosis.
Lea Marash, Noa Liberman, Sivan Henis-Korenblit, Gilad Sivan, Eran Reem, Orna Elroy-Stein, Adi Kimchi. Mol Cell 2008
99
50

Genome-wide identification and differential analysis of translational initiation.
Peng Zhang, Dandan He, Yi Xu, Jiakai Hou, Bih-Fang Pan, Yunfei Wang, Tao Liu, Christel M Davis, Erik A Ehli, Lin Tan,[...]. Nat Commun 2017
50
50

Slow peptide bond formation by proline and other N-alkylamino acids in translation.
Michael Y Pavlov, Richard E Watts, Zhongping Tan, Virginia W Cornish, Måns Ehrenberg, Anthony C Forster. Proc Natl Acad Sci U S A 2009
206
50

Differential Toxicity of Nuclear RNA Foci versus Dipeptide Repeat Proteins in a Drosophila Model of C9ORF72 FTD/ALS.
Helene Tran, Sandra Almeida, Jill Moore, Tania F Gendron, UmaDevi Chalasani, Yubing Lu, Xing Du, Jeffrey A Nickerson, Leonard Petrucelli, Zhiping Weng,[...]. Neuron 2015
136
50

Translation of dipeptide repeat proteins from the C9ORF72 expanded repeat is associated with cellular stress.
Yoshifumi Sonobe, Ghanashyam Ghadge, Katsuhisa Masaki, Ataman Sendoel, Elaine Fuchs, Raymond P Roos. Neurobiol Dis 2018
45
50

Retention of hexanucleotide repeat-containing intron in C9orf72 mRNA: implications for the pathogenesis of ALS/FTD.
Michael Niblock, Bradley N Smith, Youn-Bok Lee, Valentina Sardone, Simon Topp, Claire Troakes, Safa Al-Sarraj, Claire S Leblond, Patrick A Dion, Guy A Rouleau,[...]. Acta Neuropathol Commun 2016
34
50

Id proteins in development, cell cycle and cancer.
Marianna B Ruzinova, Robert Benezra. Trends Cell Biol 2003
463
50

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
50

GGGGCC repeat expansion in C9orf72 compromises nucleocytoplasmic transport.
Brian D Freibaum, Yubing Lu, Rodrigo Lopez-Gonzalez, Nam Chul Kim, Sandra Almeida, Kyung-Ha Lee, Nisha Badders, Marc Valentine, Bruce L Miller, Philip C Wong,[...]. Nature 2015
505
50

RPS25 is required for efficient RAN translation of C9orf72 and other neurodegenerative disease-associated nucleotide repeats.
Shizuka B Yamada, Tania F Gendron, Teresa Niccoli, Naomi R Genuth, Rosslyn Grosely, Yingxiao Shi, Idoia Glaria, Nicholas J Kramer, Lisa Nakayama, Shirleen Fang,[...]. Nat Neurosci 2019
51
50

5'-UTR recruitment of the translation initiation factor eIF4GI or DAP5 drives cap-independent translation of a subset of human mRNAs.
Solomon A Haizel, Usha Bhardwaj, Ruben L Gonzalez, Somdeb Mitra, Dixie J Goss. J Biol Chem 2020
10
50


C9orf72 and triplet repeat disorder RNAs: G-quadruplex formation, binding to PRC2 and implications for disease mechanisms.
Xueyin Wang, Karen J Goodrich, Erin G Conlon, Jianchao Gao, Annette H Erbse, James L Manley, Thomas R Cech. RNA 2019
16
50

T-Coffee: A novel method for fast and accurate multiple sequence alignment.
C Notredame, D G Higgins, J Heringa. J Mol Biol 2000
50


A widespread alternate form of cap-dependent mRNA translation initiation.
Columba de la Parra, Amanda Ernlund, Amandine Alard, Kelly Ruggles, Beatrix Ueberheide, Robert J Schneider. Nat Commun 2018
62
50


The elongation, termination, and recycling phases of translation in eukaryotes.
Thomas E Dever, Rachel Green. Cold Spring Harb Perspect Biol 2012
244
50

Production of poly(GA) in C9ORF72 patient motor neurons derived from induced pluripotent stem cells.
Sandra Almeida, Gopinath Krishnan, Mia Rushe, Yuanzheng Gu, Mark W Kankel, Fen-Biao Gao. Acta Neuropathol 2019
13
50



DAP5 associates with eIF2β and eIF4AI to promote Internal Ribosome Entry Site driven translation.
Noa Liberman, Valentina Gandin, Yuri V Svitkin, Maya David, Geneviève Virgili, Maritza Jaramillo, Martin Holcik, Bhushan Nagar, Adi Kimchi, Nahum Sonenberg. Nucleic Acids Res 2015
50
50

Regulatory discrimination of mRNAs by FMRP controls mouse adult neural stem cell differentiation.
Botao Liu, Yue Li, Emily E Stackpole, Annie Novak, Yu Gao, Yinghua Zhao, Xinyu Zhao, Joel D Richter. Proc Natl Acad Sci U S A 2018
53
50

Unconventional translation of C9ORF72 GGGGCC expansion generates insoluble polypeptides specific to c9FTD/ALS.
Peter E A Ash, Kevin F Bieniek, Tania F Gendron, Thomas Caulfield, Wen-Lang Lin, Mariely Dejesus-Hernandez, Marka M van Blitterswijk, Karen Jansen-West, Joseph W Paul, Rosa Rademakers,[...]. Neuron 2013
741
50


Partial inhibition of the overactivated Ku80-dependent DNA repair pathway rescues neurodegeneration in C9ORF72-ALS/FTD.
Rodrigo Lopez-Gonzalez, Dejun Yang, Mochtar Pribadi, Tanya S Kim, Gopinath Krishnan, So Yoen Choi, Soojin Lee, Giovanni Coppola, Fen-Biao Gao. Proc Natl Acad Sci U S A 2019
38
50

Differential Regulation of the Three Eukaryotic mRNA Translation Initiation Factor (eIF) 4Gs by the Proteasome.
Amandine Alard, Catherine Marboeuf, Bertrand Fabre, Christine Jean, Yvan Martineau, Frédéric Lopez, Patrice Vende, Didier Poncet, Robert J Schneider, Corinne Bousquet,[...]. Front Genet 2019
4
50

The C9orf72 GGGGCC repeat is translated into aggregating dipeptide-repeat proteins in FTLD/ALS.
Kohji Mori, Shih-Ming Weng, Thomas Arzberger, Stephanie May, Kristin Rentzsch, Elisabeth Kremmer, Bettina Schmid, Hans A Kretzschmar, Marc Cruts, Christine Van Broeckhoven,[...]. Science 2013
832
50

RAN proteins and RNA foci from antisense transcripts in C9ORF72 ALS and frontotemporal dementia.
Tao Zu, Yuanjing Liu, Monica Bañez-Coronel, Tammy Reid, Olga Pletnikova, Jada Lewis, Timothy M Miller, Matthew B Harms, Annet E Falchook, S H Subramony,[...]. Proc Natl Acad Sci U S A 2013
512
50

Targeting RNA foci in iPSC-derived motor neurons from ALS patients with a C9ORF72 repeat expansion.
Dhruv Sareen, Jacqueline G O'Rourke, Pratap Meera, A K M G Muhammad, Sharday Grant, Megan Simpkinson, Shaughn Bell, Sharon Carmona, Loren Ornelas, Anais Sahabian,[...]. Sci Transl Med 2013
467
50

Downregulation of microRNA-9 in iPSC-derived neurons of FTD/ALS patients with TDP-43 mutations.
Zhijun Zhang, Sandra Almeida, Yubing Lu, Agnes L Nishimura, Lingtao Peng, Danqiong Sun, Bei Wu, Anna M Karydas, Maria C Tartaglia, Jamie C Fong,[...]. PLoS One 2013
94
50

Control of mammalian translation by mRNA structure near caps.
Jeremy R Babendure, Jennie L Babendure, Jian-Hua Ding, Roger Y Tsien. RNA 2006
183
50

C9ORF72 GGGGCC repeat-associated non-AUG translation is upregulated by stress through eIF2α phosphorylation.
Weiwei Cheng, Shaopeng Wang, Alexander A Mestre, Chenglai Fu, Andres Makarem, Fengfan Xian, Lindsey R Hayes, Rodrigo Lopez-Gonzalez, Kevin Drenner, Jie Jiang,[...]. Nat Commun 2018
90
50

Intron retention induced by microsatellite expansions as a disease biomarker.
Łukasz J Sznajder, James D Thomas, Ellie M Carrell, Tammy Reid, Karen N McFarland, John D Cleary, Ruan Oliveira, Curtis A Nutter, Kirti Bhatt, Krzysztof Sobczak,[...]. Proc Natl Acad Sci U S A 2018
54
50

Direct measurement of the mechanical work during translocation by the ribosome.
Tingting Liu, Ariel Kaplan, Lisa Alexander, Shannon Yan, Jin-Der Wen, Laura Lancaster, Charles E Wickersham, Kurt Fredrick, Harry Noller, Ignacio Tinoco,[...]. Elife 2014
51
50

The molecular biology of FMRP: new insights into fragile X syndrome.
Joel D Richter, Xinyu Zhao. Nat Rev Neurosci 2021
37
50

Optimization of ribosome profiling using low-input brain tissue from fragile X syndrome model mice.
Botao Liu, Gemma Molinaro, Huan Shu, Emily E Stackpole, Kimberly M Huber, Joel D Richter. Nucleic Acids Res 2019
7
50

An Immune-Stimulatory Helix-Loop-Helix Peptide: Selective Inhibition of CTLA-4-B7 Interaction.
Tharanga M R Ramanayake Mudiyanselage, Masataka Michigami, Zhengmao Ye, Atsuko Uyeda, Norimitsu Inoue, Kikuya Sugiura, Ikuo Fujii, Daisuke Fujiwara. ACS Chem Biol 2020
8
50

FMRP Control of Ribosome Translocation Promotes Chromatin Modifications and Alternative Splicing of Neuronal Genes Linked to Autism.
Sneha Shah, Gemma Molinaro, Botao Liu, Ruijia Wang, Kimberly M Huber, Joel D Richter. Cell Rep 2020
29
50

Induced pluripotent stem cell models of progranulin-deficient frontotemporal dementia uncover specific reversible neuronal defects.
Sandra Almeida, Zhijun Zhang, Giovanni Coppola, Wenjie Mao, Kensuke Futai, Anna Karydas, Michael D Geschwind, M Carmela Tartaglia, Fuying Gao, Davide Gianni,[...]. Cell Rep 2012
93
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.