A citation-based method for searching scientific literature

E Pleasance, A Bohm, L M Williamson, J M T Nelson, Y Shen, M Bonakdar, E Titmuss, V Csizmok, K Wee, S Hosseinzadeh, C J Grisdale, C Reisle, G A Taylor, E Lewis, M R Jones, D Bleile, S Sadeghi, W Zhang, A Davies, B Pellegrini, T Wong, R Bowlby, S K Chan, K L Mungall, E Chuah, A J Mungall, R A Moore, Y Zhao, B Deol, A Fisic, A Fok, D A Regier, D Weymann, D F Schaeffer, S Young, S Yip, K Schrader, N Levasseur, S K Taylor, X Feng, A Tinker, K J Savage, S Chia, K Gelmon, S Sun, H Lim, D J Renouf, S J M Jones, M A Marra, J Laskin. Ann Oncol 2022
Times Cited: 3







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Recommendations for the use of next-generation sequencing (NGS) for patients with metastatic cancers: a report from the ESMO Precision Medicine Working Group.
F Mosele, J Remon, J Mateo, C B Westphalen, F Barlesi, M P Lolkema, N Normanno, A Scarpa, M Robson, F Meric-Bernstam,[...]. Ann Oncol 2020
289
66

Cancer Biomarkers in the era of precision oncology: Addressing the needs of patients and health systems.
Nicola Normanno, Kathi Apostolidis, Francesco de Lorenzo, Philip A Beer, Raymond Henderson, Richard Sullivan, Andrew V Biankin, Denis Horgan, Mark Lawler. Semin Cancer Biol 2022
7
66

Pan-cancer whole-genome analyses of metastatic solid tumours.
Peter Priestley, Jonathan Baber, Martijn P Lolkema, Neeltje Steeghs, Ewart de Bruijn, Charles Shale, Korneel Duyvesteyn, Susan Haidari, Arne van Hoeck, Wendy Onstenk,[...]. Nature 2019
354
33


Limited evolution of the actionable metastatic cancer genome under therapeutic pressure.
Joris van de Haar, Louisa R Hoes, Paul Roepman, Martijn P Lolkema, Henk M W Verheul, Hans Gelderblom, Adrianus J de Langen, Egbert F Smit, Edwin Cuppen, Lodewyk F A Wessels,[...]. Nat Med 2021
17
33

A Summary of the Inaugural WHO Classification of Pediatric Tumors: Transitioning from the Optical into the Molecular Era.
Stefan M Pfister, Miguel Reyes-Múgica, John K C Chan, Henrik Hasle, Alexander J Lazar, Sabrina Rossi, Andrea Ferrari, Jason A Jarzembowski, Kathy Pritchard-Jones, D Ashley Hill,[...]. Cancer Discov 2022
14
33

An analysis of genetic heterogeneity in untreated cancers.
Johannes G Reiter, Marina Baretti, Jeffrey M Gerold, Alvin P Makohon-Moore, Adil Daud, Christine A Iacobuzio-Donahue, Nilofer S Azad, Kenneth W Kinzler, Martin A Nowak, Bert Vogelstein. Nat Rev Cancer 2019
87
33

Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers.
N Shukla, M F Levine, G Gundem, D Domenico, B Spitzer, N Bouvier, J E Arango-Ossa, D Glodzik, J S Medina-Martínez, U Bhanot,[...]. Nat Commun 2022
3
33

Reasons to be testing: the dawn of complex molecular profiling in routine oncology practice.
Philip A Beer, Susanna L Cooke, David K Chang, Andrew V Biankin. Ann Oncol 2019
4
33


Supervised risk predictor of breast cancer based on intrinsic subtypes.
Joel S Parker, Michael Mullins, Maggie C U Cheang, Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu,[...]. J Clin Oncol 2009
33

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
33

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
33

Visualizing and interpreting cancer genomics data via the Xena platform.
Mary J Goldman, Brian Craft, Mim Hastie, Kristupas Repečka, Fran McDade, Akhil Kamath, Ayan Banerjee, Yunhai Luo, Dave Rogers, Angela N Brooks,[...]. Nat Biotechnol 2020
969
33

Genomic and transcriptomic profiling expands precision cancer medicine: the WINTHER trial.
Jordi Rodon, Jean-Charles Soria, Raanan Berger, Wilson H Miller, Eitan Rubin, Aleksandra Kugel, Apostolia Tsimberidou, Pierre Saintigny, Aliza Ackerstein, Irene Braña,[...]. Nat Med 2019
217
33

The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective.
Saba Ahmadi, Pattara Sukprasert, Rahulsimham Vegesna, Sanju Sinha, Fiorella Schischlik, Natalie Artzi, Samir Khuller, Alejandro A Schäffer, Eytan Ruppin. Nat Commun 2022
1
100

Detection and characterization of lung cancer using cell-free DNA fragmentomes.
Dimitrios Mathios, Jakob Sidenius Johansen, Stephen Cristiano, Jamie E Medina, Jillian Phallen, Klaus R Larsen, Daniel C Bruhm, Noushin Niknafs, Leonardo Ferreira, Vilmos Adleff,[...]. Nat Commun 2021
43
33

Real-world data from a molecular tumor board demonstrates improved outcomes with a precision N-of-One strategy.
Shumei Kato, Ki Hwan Kim, Hyo Jeong Lim, Amelie Boichard, Mina Nikanjam, Elizabeth Weihe, Dennis J Kuo, Ramez N Eskander, Aaron Goodman, Natalie Galanina,[...]. Nat Commun 2020
92
33

Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy.
Avinash Das Sahu, Joo S Lee, Zhiyong Wang, Gao Zhang, Ramiro Iglesias-Bartolome, Tian Tian, Zhi Wei, Benchun Miao, Nishanth Ulhas Nair, Olga Ponomarova,[...]. Mol Syst Biol 2019
13
33

70-Gene Signature as an Aid to Treatment Decisions in Early-Stage Breast Cancer.
Fatima Cardoso, Laura J van't Veer, Jan Bogaerts, Leen Slaets, Giuseppe Viale, Suzette Delaloge, Jean-Yves Pierga, Etienne Brain, Sylvain Causeret, Mauro DeLorenzi,[...]. N Engl J Med 2016
955
33

PhyloWGS: reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.
Amit G Deshwar, Shankar Vembu, Christina K Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris. Genome Biol 2015
210
33

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.
Assaf Rotem, Oren Ram, Noam Shoresh, Ralph A Sperling, Alon Goren, David A Weitz, Bradley E Bernstein. Nat Biotechnol 2015
498
33

Identification of resistance pathways and therapeutic targets in relapsed multiple myeloma patients through single-cell sequencing.
Yael C Cohen, Mor Zada, Shuang-Yin Wang, Chamutal Bornstein, Eyal David, Adi Moshe, Baoguo Li, Shir Shlomi-Loubaton, Moshe E Gatt, Chamutal Gur,[...]. Nat Med 2021
43
33

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
33

Inference of transcriptional regulation in cancers.
Peng Jiang, Matthew L Freedman, Jun S Liu, Xiaole Shirley Liu. Proc Natl Acad Sci U S A 2015
53
33


ArrayExpress--a public database of microarray experiments and gene expression profiles.
H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, R Coulson, A Farne, E Holloway, N Kolesnykov, P Lilja, M Lukk,[...]. Nucleic Acids Res 2007
408
33

Harnessing multimodal data integration to advance precision oncology.
Kevin M Boehm, Pegah Khosravi, Rami Vanguri, Jianjiong Gao, Sohrab P Shah. Nat Rev Cancer 2022
30
33

Artificial intelligence for clinical oncology.
Benjamin H Kann, Ahmed Hosny, Hugo J W L Aerts. Cancer Cell 2021
30
33

DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network.
Jared L Katzman, Uri Shaham, Alexander Cloninger, Jonathan Bates, Tingting Jiang, Yuval Kluger. BMC Med Res Methodol 2018
264
33

Deep neural nets as a method for quantitative structure-activity relationships.
Junshui Ma, Robert P Sheridan, Andy Liaw, George E Dahl, Vladimir Svetnik. J Chem Inf Model 2015
383
33

Reproducibility in machine learning for health research: Still a ways to go.
Matthew B A McDermott, Shirly Wang, Nikki Marinsek, Rajesh Ranganath, Luca Foschini, Marzyeh Ghassemi. Sci Transl Med 2021
34
33


Genomic correlates of response to CTLA-4 blockade in metastatic melanoma.
Eliezer M Van Allen, Diana Miao, Bastian Schilling, Sachet A Shukla, Christian Blank, Lisa Zimmer, Antje Sucker, Uwe Hillen, Marnix H Geukes Foppen, Simone M Goldinger,[...]. Science 2015
33

End-to-end lung cancer screening with three-dimensional deep learning on low-dose chest computed tomography.
Diego Ardila, Atilla P Kiraly, Sujeeth Bharadwaj, Bokyung Choi, Joshua J Reicher, Lily Peng, Daniel Tse, Mozziyar Etemadi, Wenxing Ye, Greg Corrado,[...]. Nat Med 2019
524
33

Network-based stratification of tumor mutations.
Matan Hofree, John P Shen, Hannah Carter, Andrew Gross, Trey Ideker. Nat Methods 2013
452
33

Synthetic lethality-mediated precision oncology via the tumor transcriptome.
Joo Sang Lee, Nishanth Ulhas Nair, Gal Dinstag, Lesley Chapman, Youngmin Chung, Kun Wang, Sanju Sinha, Hongui Cha, Dasol Kim, Alexander V Schperberg,[...]. Cell 2021
18
33

Breast tumours maintain a reservoir of subclonal diversity during expansion.
Darlan C Minussi, Michael D Nicholson, Hanghui Ye, Alexander Davis, Kaile Wang, Toby Baker, Maxime Tarabichi, Emi Sei, Haowei Du, Mashiat Rabbani,[...]. Nature 2021
43
33

Single-cell genome sequencing: current state of the science.
Charles Gawad, Winston Koh, Stephen R Quake. Nat Rev Genet 2016
671
33


Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.
Kyle Ellrott, Matthew H Bailey, Gordon Saksena, Kyle R Covington, Cyriac Kandoth, Chip Stewart, Julian Hess, Singer Ma, Kami E Chiotti, Michael McLellan,[...]. Cell Syst 2018
342
33

The prognostic landscape of genes and infiltrating immune cells across human cancers.
Andrew J Gentles, Aaron M Newman, Chih Long Liu, Scott V Bratman, Weiguo Feng, Dongkyoon Kim, Viswam S Nair, Yue Xu, Amanda Khuong, Chuong D Hoang,[...]. Nat Med 2015
33

Benchmarking of cell type deconvolution pipelines for transcriptomics data.
Francisco Avila Cobos, José Alquicira-Hernandez, Joseph E Powell, Pieter Mestdagh, Katleen De Preter. Nat Commun 2020
70
33

Endogenous Retroelements and the Viral Mimicry Response in Cancer Therapy and Cellular Homeostasis.
Raymond Chen, Charles A Ishak, Daniel D De Carvalho. Cancer Discov 2021
10
33

A new era in functional genomics screens.
Laralynne Przybyla, Luke A Gilbert. Nat Rev Genet 2022
17
33

Systematic investigation of cytokine signaling activity at the tissue and single-cell levels.
Peng Jiang, Yu Zhang, Beibei Ru, Yuan Yang, Trang Vu, Rohit Paul, Amer Mirza, Grégoire Altan-Bonnet, Lingrui Liu, Eytan Ruppin,[...]. Nat Methods 2021
13
33

Interactome networks and human disease.
Marc Vidal, Michael E Cusick, Albert-László Barabási. Cell 2011
989
33

Integrative single-cell analysis.
Tim Stuart, Rahul Satija. Nat Rev Genet 2019
494
33

PyClone: statistical inference of clonal population structure in cancer.
Andrew Roth, Jaswinder Khattra, Damian Yap, Adrian Wan, Emma Laks, Justina Biele, Gavin Ha, Samuel Aparicio, Alexandre Bouchard-Côté, Sohrab P Shah. Nat Methods 2014
549
33

Interpretable survival prediction for colorectal cancer using deep learning.
Ellery Wulczyn, David F Steiner, Melissa Moran, Markus Plass, Robert Reihs, Fraser Tan, Isabelle Flament-Auvigne, Trissia Brown, Peter Regitnig, Po-Hsuan Cameron Chen,[...]. NPJ Digit Med 2021
29
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.