A citation-based method for searching scientific literature

Scott G Hansen, Meaghan H Hancock, Daniel Malouli, Emily E Marshall, Colette M Hughes, Kurt T Randall, David Morrow, Julia C Ford, Roxanne M Gilbride, Andrea N Selseth, Renee Espinosa Trethewy, Lindsey M Bishop, Kelli Oswald, Rebecca Shoemaker, Brian Berkemeier, William J Bosche, Michael Hull, Lorna Silipino, Michael Nekorchuk, Kathleen Busman-Sahay, Jacob D Estes, Michael K Axthelm, Jeremy Smedley, Danica Shao, Paul T Edlefsen, Jeffrey D Lifson, Klaus Früh, Jay A Nelson, Louis J Picker. Sci Immunol 2022
Times Cited: 3







List of co-cited articles
6 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cytomegalovirus vectors violate CD8+ T cell epitope recognition paradigms.
Scott G Hansen, Jonah B Sacha, Colette M Hughes, Julia C Ford, Benjamin J Burwitz, Isabel Scholz, Roxanne M Gilbride, Matthew S Lewis, Awbrey N Gilliam, Abigail B Ventura,[...]. Science 2013
330
66

Profound early control of highly pathogenic SIV by an effector memory T-cell vaccine.
Scott G Hansen, Julia C Ford, Matthew S Lewis, Abigail B Ventura, Colette M Hughes, Lia Coyne-Johnson, Nathan Whizin, Kelli Oswald, Rebecca Shoemaker, Tonya Swanson,[...]. Nature 2011
763
66

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy.
Fredrik Barrenäs, Scott G Hansen, Lynn Law, Connor Driscoll, Richard R Green, Elise Smith, Jean Chang, Inah Golez, Taryn Urion, Xinxia Peng,[...]. PLoS Pathog 2021
8
66

Vaccine Efficacy of ALVAC-HIV and Bivalent Subtype C gp120-MF59 in Adults.
Glenda E Gray, Linda-Gail Bekker, Fatima Laher, Mookho Malahleha, Mary Allen, Zoe Moodie, Nicole Grunenberg, Yunda Huang, Doug Grove, Brittany Prigmore,[...]. N Engl J Med 2021
70
66

Modulation of MHC-E transport by viral decoy ligands is required for RhCMV/SIV vaccine efficacy.
Marieke C Verweij, Scott G Hansen, Ravi Iyer, Nessy John, Daniel Malouli, David Morrow, Isabel Scholz, Jennie Womack, Shaheed Abdulhaqq, Roxanne M Gilbride,[...]. Science 2021
16
66

A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques.
Beatriz Mothe, Xintao Hu, Anuska Llano, Margherita Rosati, Alex Olvera, Viraj Kulkarni, Antonio Valentin, Candido Alicea, Guy R Pilkington, Niranjan Y Sardesai,[...]. J Transl Med 2015
70
66

Protein coding content of the UL)b' region of wild-type rhesus cytomegalovirus.
Kristie L Oxford, Meghan K Eberhardt, Kai-Wen Yang, Lisa Strelow, Suzanne Kelly, Shan-Shan Zhou, Peter A Barry. Virology 2008
45
33



Natural Killer Cell Evasion Is Essential for Infection by Rhesus Cytomegalovirus.
Elizabeth R Sturgill, Daniel Malouli, Scott G Hansen, Benjamin J Burwitz, Seongkyung Seo, Christine L Schneider, Jennie L Womack, Marieke C Verweij, Abigail B Ventura, Amruta Bhusari,[...]. PLoS Pathog 2016
27
33

Differential antigen presentation kinetics of CD8+ T-cell epitopes derived from the same viral protein.
Jonah B Sacha, Matthew R Reynolds, Matthew B Buechler, Chungwon Chung, Anna K Jonas, Lyle T Wallace, Andrea M Weiler, Wonhee Lee, Shari M Piaskowski, Taeko Soma,[...]. J Virol 2008
26
33

A live-attenuated RhCMV/SIV vaccine shows long-term efficacy against heterologous SIV challenge.
Scott G Hansen, Emily E Marshall, Daniel Malouli, Abigail B Ventura, Colette M Hughes, Emily Ainslie, Julia C Ford, David Morrow, Roxanne M Gilbride, Jin Y Bae,[...]. Sci Transl Med 2019
53
33

Rapid Induction of Multifunctional Antibodies in Rabbits and Macaques by Clade C HIV-1 CAP257 Envelopes Circulating During Epitope-Specific Neutralization Breadth Development.
Delphine C Malherbe, Constantinos Kurt Wibmer, Molati Nonyane, Jason Reed, D Noah Sather, David A Spencer, Jason T Schuman, Biwei Guo, Shilpi Pandey, Harlan Robins,[...]. Front Immunol 2020
7
33

Structural basis for a major histocompatibility complex class Ib-restricted T cell response.
Hilary L Hoare, Lucy C Sullivan, Gabriella Pietra, Craig S Clements, Eleanor J Lee, Lauren K Ely, Travis Beddoe, Michela Falco, Lars Kjer-Nielsen, Hugh H Reid,[...]. Nat Immunol 2006
89
33



Effective simian immunodeficiency virus-specific CD8+ T cells lack an easily detectable, shared characteristic.
Lara Vojnov, Jason S Reed, Kim L Weisgrau, Eva G Rakasz, John T Loffredo, Shari M Piaskowski, Jonah B Sacha, Holly L Kolar, Nancy A Wilson, R Paul Johnson,[...]. J Virol 2010
20
33

Antibody-based CCR5 blockade protects Macaques from mucosal SHIV transmission.
Xiao L Chang, Gabriela M Webb, Helen L Wu, Justin M Greene, Shaheed Abdulhaqq, Katherine B Bateman, Jason S Reed, Cleiton Pessoa, Whitney C Weber, Nicholas Maier,[...]. Nat Commun 2021
7
33

A conserved energetic footprint underpins recognition of human leukocyte antigen-E by two distinct αβ T cell receptors.
Lucy C Sullivan, Nicholas G Walpole, Carine Farenc, Gabriella Pietra, Matthew J W Sum, Craig S Clements, Eleanor J Lee, Travis Beddoe, Michela Falco, Maria Cristina Mingari,[...]. J Biol Chem 2017
16
33


Viral opportunistic infections in Mauritian cynomolgus macaques undergoing allogeneic stem cell transplantation mirror human transplant infectious disease complications.
Helen L Wu, Whitney C Weber, Christine Shriver-Munsch, Tonya Swanson, Mina Northrup, Heidi Price, Kimberly Armantrout, Mitchell Robertson-LeVay, Jason S Reed, Katherine B Bateman,[...]. Xenotransplantation 2020
4
33

Unparalleled complexity of the MHC class I region in rhesus macaques.
Nel Otting, Corrine M C Heijmans, Riet C Noort, Natasja G de Groot, Gaby G M Doxiadis, Jon J van Rood, David I Watkins, Ronald E Bontrop. Proc Natl Acad Sci U S A 2005
167
33

The Molecular Signatures Database (MSigDB) hallmark gene set collection.
Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, Mahmoud Ghandi, Jill P Mesirov, Pablo Tamayo. Cell Syst 2015
33

Cross-Species Rhesus Cytomegalovirus Infection of Cynomolgus Macaques.
Benjamin J Burwitz, Daniel Malouli, Benjamin N Bimber, Jason S Reed, Abigail B Ventura, Meaghan H Hancock, Luke S Uebelhoer, Amruta Bhusari, Katherine B Hammond, Renee G Espinosa Trethewy,[...]. PLoS Pathog 2016
27
33

Immune clearance of highly pathogenic SIV infection.
Scott G Hansen, Michael Piatak, Abigail B Ventura, Colette M Hughes, Roxanne M Gilbride, Julia C Ford, Kelli Oswald, Rebecca Shoemaker, Yuan Li, Matthew S Lewis,[...]. Nature 2013
435
33

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
33

The Role of MHC-E in T Cell Immunity Is Conserved among Humans, Rhesus Macaques, and Cynomolgus Macaques.
Helen L Wu, Roger W Wiseman, Colette M Hughes, Gabriela M Webb, Shaheed A Abdulhaqq, Benjamin N Bimber, Katherine B Hammond, Jason S Reed, Lina Gao, Benjamin J Burwitz,[...]. J Immunol 2018
33
33

Conservation of cell-intrinsic immune responses in diverse nonhuman primate species.
Jenna M Gaska, Lance Parsons, Metodi Balev, Ann Cirincione, Wei Wang, Robert E Schwartz, Alexander Ploss. Life Sci Alliance 2019
3
33

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs.
Yuxing Liao, Jing Wang, Eric J Jaehnig, Zhiao Shi, Bing Zhang. Nucleic Acids Res 2019
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33

Broadly targeted CD8⁺ T cell responses restricted by major histocompatibility complex E.
Scott G Hansen, Helen L Wu, Benjamin J Burwitz, Colette M Hughes, Katherine B Hammond, Abigail B Ventura, Jason S Reed, Roxanne M Gilbride, Emily Ainslie, David W Morrow,[...]. Science 2016
206
33

Expansion of Simian Immunodeficiency Virus (SIV)-Specific CD8 T Cell Lines from SIV-Naive Mauritian Cynomolgus Macaques for Adoptive Transfer.
Mariel S Mohns, Justin M Greene, Brian T Cain, Ngoc H Pham, Emma Gostick, David A Price, David H O'Connor. J Virol 2015
12
33


Genetic makeup of the DR region in rhesus macaques: gene content, transcripts, and pseudogenes.
Nanine de Groot, Gaby G Doxiadis, Natasja G De Groot, Nel Otting, Corrine Heijmans, Annemiek J M Rouweler, Ronald E Bontrop. J Immunol 2004
48
33

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
33

Cloning and mutagenesis of a herpesvirus genome as an infectious bacterial artificial chromosome.
M Messerle, I Crnkovic, W Hammerschmidt, H Ziegler, U H Koszinowski. Proc Natl Acad Sci U S A 1997
341
33

Vaccination against endogenous retrotransposable element consensus sequences does not protect rhesus macaques from SIVsmE660 infection and replication.
Neil C Sheppard, R Brad Jones, Benjamin J Burwitz, Francesca A Nimityongskul, Laura P Newman, Matthew B Buechler, Jason S Reed, Shari M Piaskowski, Kim L Weisgrau, Philip A Castrovinci,[...]. PLoS One 2014
8
33

Mauritian cynomolgus macaques share two exceptionally common major histocompatibility complex class I alleles that restrict simian immunodeficiency virus-specific CD8+ T cells.
Benjamin J Burwitz, Chad J Pendley, Justin M Greene, Ann M Detmer, Jennifer J Lhost, Julie A Karl, Shari M Piaskowski, Richard A Rudersdorf, Lyle T Wallace, Benjamin N Bimber,[...]. J Virol 2009
62
33

Expansion of dysfunctional Tim-3-expressing effector memory CD8+ T cells during simian immunodeficiency virus infection in rhesus macaques.
Tsuyoshi Fujita, Benjamin J Burwitz, Glen M Chew, Jason S Reed, Reesab Pathak, Elizabeth Seger, Kiera L Clayton, James M Rini, Mario A Ostrowski, Naoto Ishii,[...]. J Immunol 2014
21
33

En passant mutagenesis: a two step markerless red recombination system.
B Karsten Tischer, Gregory A Smith, Nikolaus Osterrieder. Methods Mol Biol 2010
393
33

In vitro and in vivo characterization of a recombinant rhesus cytomegalovirus containing a complete genome.
Husam Taher, Eisa Mahyari, Craig Kreklywich, Luke S Uebelhoer, Matthew R McArdle, Matilda J Moström, Amruta Bhusari, Michael Nekorchuk, Xiaofei E, Travis Whitmer,[...]. PLoS Pathog 2020
11
33

Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge.
Scott G Hansen, Cassandra Vieville, Nathan Whizin, Lia Coyne-Johnson, Don C Siess, Derek D Drummond, Alfred W Legasse, Michael K Axthelm, Kelli Oswald, Charles M Trubey,[...]. Nat Med 2009
541
33

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.
Charity W Law, Yunshun Chen, Wei Shi, Gordon K Smyth. Genome Biol 2014
33

Comprehensive characterization of MHC class II haplotypes in Mauritian cynomolgus macaques.
Shelby L O'Connor, Alex J Blasky, Chad J Pendley, Ericka A Becker, Roger W Wiseman, Julie A Karl, Austin L Hughes, David H O'Connor. Immunogenetics 2007
106
33

Reconstruction of the complete human cytomegalovirus genome in a BAC reveals RL13 to be a potent inhibitor of replication.
Richard J Stanton, Katarina Baluchova, Derrick J Dargan, Charles Cunningham, Orla Sheehy, Sepehr Seirafian, Brian P McSharry, M Lynne Neale, James A Davies, Peter Tomasec,[...]. J Clin Invest 2010
171
33

Specific CD8+ T cell responses correlate with control of simian immunodeficiency virus replication in Mauritian cynomolgus macaques.
Melisa L Budde, Justin M Greene, Emily N Chin, Adam J Ericsen, Matthew Scarlotta, Brian T Cain, Ngoc H Pham, Ericka A Becker, Max Harris, Jason T Weinfurter,[...]. J Virol 2012
42
33

Terumo spectra optia leukapheresis of cynomolgus macaques for hematopoietic stem cell and T cell collection.
Helen L Wu, Justin M Greene, Tonya Swanson, Christine Shriver-Munsch, Kimberly Armantrout, Whitney C Weber, Katherine B Bateman, Nicholas M Maier, Mina Northrup, Alfred W Legasse,[...]. J Clin Apher 2021
2
50

Allogeneic stem cell transplantation in fully MHC-matched Mauritian cynomolgus macaques recapitulates diverse human clinical outcomes.
Benjamin J Burwitz, Helen L Wu, Shaheed Abdulhaqq, Christine Shriver-Munsch, Tonya Swanson, Alfred W Legasse, Katherine B Hammond, Stephanie L Junell, Jason S Reed, Benjamin N Bimber,[...]. Nat Commun 2017
16
33

Causal analysis approaches in Ingenuity Pathway Analysis.
Andreas Krämer, Jeff Green, Jack Pollard, Stuart Tugendreich. Bioinformatics 2014
33

Characterization of Mauritian cynomolgus macaque major histocompatibility complex class I haplotypes by high-resolution pyrosequencing.
Melisa L Budde, Roger W Wiseman, Julie A Karl, Bozena Hanczaruk, Birgitte B Simen, David H O'Connor. Immunogenetics 2010
86
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.