A citation-based method for searching scientific literature

Grzegorz Chojnowski. Acta Crystallogr D Struct Biol 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Dorothee Liebschner, Pavel V Afonine, Matthew L Baker, Gábor Bunkóczi, Vincent B Chen, Tristan I Croll, Bradley Hintze, Li Wei Hung, Swati Jain, Airlie J McCoy,[...]. Acta Crystallogr D Struct Biol 2019
100


Cryo-EM snapshots of a native lysate provide structural insights into a metabolon-embedded transacetylase reaction.
Christian Tüting, Fotis L Kyrilis, Johannes Müller, Marija Sorokina, Ioannis Skalidis, Farzad Hamdi, Yashar Sadian, Panagiotis L Kastritis. Nat Commun 2021
3
100


Structure of the dihydrolipoamide succinyltransferase catalytic domain from Escherichia coli in a novel crystal form: a tale of a common protein crystallization contaminant.
Babak Andi, Alexei S Soares, Wuxian Shi, Martin R Fuchs, Sean McSweeney, Qun Liu. Acta Crystallogr F Struct Biol Commun 2019
3
100

Crystal structure of the E1 component of the Escherichia coli 2-oxoglutarate dehydrogenase multienzyme complex.
René A W Frank, Amanda J Price, Fred D Northrop, Richard N Perham, Ben F Luisi. J Mol Biol 2007
53
100

Structure of the dihydrolipoamide succinyltransferase (E2) component of the human alpha-ketoglutarate dehydrogenase complex (hKGDHc) revealed by cryo-EM and cross-linking mass spectrometry: Implications for the overall hKGDHc structure.
Balint Nagy, Martin Polak, Oliver Ozohanics, Zsofia Zambo, Eszter Szabo, Agnes Hubert, Frank Jordan, Jiří Novaček, Vera Adam-Vizi, Attila Ambrus. Biochim Biophys Acta Gen Subj 2021
6
100

Structure of the native pyruvate dehydrogenase complex reveals the mechanism of substrate insertion.
Jana Škerlová, Jens Berndtsson, Hendrik Nolte, Martin Ott, Pål Stenmark. Nat Commun 2021
9
100

ColabFold: making protein folding accessible to all.
Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, Lim Heo, Sergey Ovchinnikov, Martin Steinegger. Nat Methods 2022
336
100


Cryo-EM and artificial intelligence visualize endogenous protein community members.
Ioannis Skalidis, Fotis L Kyrilis, Christian Tüting, Farzad Hamdi, Grzegorz Chojnowski, Panagiotis L Kastritis. Structure 2022
6
100

Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family.
Neil Ferguson, Timothy D Sharpe, Pamela J Schartau, Satoshi Sato, Mark D Allen, Christopher M Johnson, Trevor J Rutherford, Alan R Fersht. J Mol Biol 2005
87
100


A multipronged approach unravels unprecedented protein-protein interactions in the human 2-oxoglutarate dehydrogenase multienzyme complex.
Jieyu Zhou, Luying Yang, Oliver Ozohanics, Xu Zhang, Junjie Wang, Attila Ambrus, Palaniappa Arjunan, Roman Brukh, Natalia S Nemeria, William Furey,[...]. J Biol Chem 2018
14
100

Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.
Chi-Min Ho, Jonathan Jih, Mason Lai, Xiaorun Li, Daniel E Goldberg, Josh R Beck, Z Hong Zhou. Proc Natl Acad Sci U S A 2021
11
100

54
100

Atomic structure of the cubic core of the pyruvate dehydrogenase multienzyme complex.
A Mattevi, G Obmolova, E Schulze, K H Kalk, A H Westphal, A de Kok, W G Hol. Science 1992
211
100

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
100



Pyruvate dehydrogenase complex activity controls metabolic and malignant phenotype in cancer cells.
Thomas McFate, Ahmed Mohyeldin, Huasheng Lu, Jay Thakar, Jeremy Henriques, Nader D Halim, Hong Wu, Michael J Schell, Tsz Mon Tsang, Orla Teahan,[...]. J Biol Chem 2008
271
100

findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM.
Grzegorz Chojnowski, Adam J Simpkin, Diego A Leonardo, Wolfram Seifert-Davila, Dan E Vivas-Ruiz, Ronan M Keegan, Daniel J Rigden. IUCrJ 2021
9
100

Targeting Cancer Metabolism - Revisiting the Warburg Effects.
Quangdon Tran, Hyunji Lee, Jisoo Park, Seon-Hwan Kim, Jongsun Park. Toxicol Res 2016
64
100

Crystallographic analysis of substrate binding and catalysis in dihydrolipoyl transacetylase (E2p).
A Mattevi, G Obmolova, K H Kalk, A Teplyakov, W G Hol. Biochemistry 1993
56
100

EMBOSS: the European Molecular Biology Open Software Suite.
P Rice, I Longden, A Bleasby. Trends Genet 2000
100

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
100



The methionine-aromatic motif plays a unique role in stabilizing protein structure.
Christopher C Valley, Alessandro Cembran, Jason D Perlmutter, Andrew K Lewis, Nicholas P Labello, Jiali Gao, Jonathan N Sachs. J Biol Chem 2012
181
100

Pyruvate dehydrogenase complex deficiency is linked to regulatory loop disorder in the αV138M variant of human pyruvate dehydrogenase.
Matthew J Whitley, Palaniappa Arjunan, Natalia S Nemeria, Lioubov G Korotchkina, Yun-Hee Park, Mulchand S Patel, Frank Jordan, William Furey. J Biol Chem 2018
6
100



CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
100


AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.
Mihaly Varadi, Stephen Anyango, Mandar Deshpande, Sreenath Nair, Cindy Natassia, Galabina Yordanova, David Yuan, Oana Stroe, Gemma Wood, Agata Laydon,[...]. Nucleic Acids Res 2022
510
100

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.
Tristan Bepler, Andrew Morin, Micah Rapp, Julia Brasch, Lawrence Shapiro, Alex J Noble, Bonnie Berger. Nat Methods 2019
210
100

Arrangement and symmetry of the fungal E3BP-containing core of the pyruvate dehydrogenase complex.
B O Forsberg, S Aibara, R J Howard, N Mortezaei, E Lindahl. Nat Commun 2020
9
100

On the unique structural organization of the Saccharomyces cerevisiae pyruvate dehydrogenase complex.
J K Stoops, R H Cheng, M A Yazdi, C Y Maeng, J P Schroeter, U Klueppelberg, S J Kolodziej, T S Baker, L J Reed. J Biol Chem 1997
49
100

Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer.
Jingjing Chen, Ilaria Guccini, Diletta Di Mitri, Daniela Brina, Ajinkya Revandkar, Manuela Sarti, Emiliano Pasquini, Abdullah Alajati, Sandra Pinton, Marco Losa,[...]. Nat Genet 2018
79
100


New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
100

Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu.
Chi-Min Ho, Xiaorun Li, Mason Lai, Thomas C Terwilliger, Josh R Beck, James Wohlschlegel, Daniel E Goldberg, Anthony W P Fitzpatrick, Z Hong Zhou. Nat Methods 2020
41
100

Pyruvate dehydrogenase complex from bovine kidney and heart.
F H Pettit, L J Reed. Methods Enzymol 1982
59
100

Structures of the human pyruvate dehydrogenase complex cores: a highly conserved catalytic center with flexible N-terminal domains.
Xuekui Yu, Yasuaki Hiromasa, Hua Tsen, James K Stoops, Thomas E Roche, Z Hong Zhou. Structure 2008
48
100


A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
Masato Kato, R Max Wynn, Jacinta L Chuang, Chad A Brautigam, Myra Custorio, David T Chuang. EMBO J 2006
32
100

Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy.
Alberto Bartesaghi, Doreen Matthies, Soojay Banerjee, Alan Merk, Sriram Subramaniam. Proc Natl Acad Sci U S A 2014
128
100


Branched-chain amino acid metabolism: from rare Mendelian diseases to more common disorders.
Lindsay C Burrage, Sandesh C S Nagamani, Philippe M Campeau, Brendan H Lee. Hum Mol Genet 2014
74
100

Analysis Tool Web Services from the EMBL-EBI.
Hamish McWilliam, Weizhong Li, Mahmut Uludag, Silvano Squizzato, Young Mi Park, Nicola Buso, Andrew Peter Cowley, Rodrigo Lopez. Nucleic Acids Res 2013
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.