A citation-based method for searching scientific literature

Serena Dotolo, Riziero Esposito Abate, Cristin Roma, Davide Guido, Alessia Preziosi, Beatrice Tropea, Fernando Palluzzi, Luciano Giacò, Nicola Normanno. Biomedicines 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
100



NEMO: cancer subtyping by integration of partial multi-omic data.
Nimrod Rappoport, Ron Shamir. Bioinformatics 2019
67
100

Maftools: efficient and comprehensive analysis of somatic variants in cancer.
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
100

Update on uveal melanoma: Translational research from biology to clinical practice (Review).
Miguel A Ortega, Oscar Fraile-Martínez, Natalio García-Honduvilla, Santiago Coca, Melchor Álvarez-Mon, Julia Buján, Miguel A Teus. Int J Oncol 2020
18
100

Data Fusion Techniques for the Integration of Multi-Domain Genomic Data from Uveal Melanoma.
Max Pfeffer, André Uschmajew, Adriana Amaro, Ulrich Pfeffer. Cancers (Basel) 2019
4
100

Spectrum: fast density-aware spectral clustering for single and multi-omic data.
Christopher R John, David Watson, Michael R Barnes, Costantino Pitzalis, Myles J Lewis. Bioinformatics 2020
16
100

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.
Marco Carraro, Giovanni Minervini, Manuel Giollo, Yana Bromberg, Emidio Capriotti, Rita Casadio, Roland Dunbrack, Lisa Elefanti, Pietro Fariselli, Carlo Ferrari,[...]. Hum Mutat 2017
9
100

Combining common genetic variants and non-genetic risk factors to predict risk of cutaneous melanoma.
Fangyi Gu, Ting-Huei Chen, Ruth M Pfeiffer, Maria Concetta Fargnoli, Donato Calista, Paola Ghiorzo, Ketty Peris, Susana Puig, Chiara Menin, Arcangela De Nicolo,[...]. Hum Mol Genet 2018
26
100

Heterogeneous data integration methods for patient similarity networks.
Jessica Gliozzo, Marco Mesiti, Marco Notaro, Alessandro Petrini, Alex Patak, Antonio Puertas-Gallardo, Alberto Paccanaro, Giorgio Valentini, Elena Casiraghi. Brief Bioinform 2022
2
100

clusterProfiler 4.0: A universal enrichment tool for interpreting omics data.
Tianzhi Wu, Erqiang Hu, Shuangbin Xu, Meijun Chen, Pingfan Guo, Zehan Dai, Tingze Feng, Lang Zhou, Wenli Tang, Li Zhan,[...]. Innovation (N Y) 2021
979
100

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
100

A hierarchical clustering and data fusion approach for disease subtype discovery.
Bastian Pfeifer, Michael G Schimek. J Biomed Inform 2021
6
100

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Zuguang Gu, Roland Eils, Matthias Schlesner. Bioinformatics 2016
100

DNA hypermethylation is associated with invasive phenotype of malignant melanoma.
Viktória Koroknai, István Szász, Hector Hernandez-Vargas, Nora Fernandez-Jimenez, Cyrille Cuenin, Zdenko Herceg, Laura Vízkeleti, Róza Ádány, Szilvia Ecsedi, Margit Balázs. Exp Dermatol 2020
23
100

A comprehensive custom panel design for routine hereditary cancer testing: preserving control, improving diagnostics and revealing a complex variation landscape.
Elisabeth Castellanos, Bernat Gel, Inma Rosas, Eva Tornero, Sheila Santín, Raquel Pluvinet, Juan Velasco, Lauro Sumoy, Jesús Del Valle, Manuel Perucho,[...]. Sci Rep 2017
35
100


TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.
Antonio Colaprico, Tiago C Silva, Catharina Olsen, Luciano Garofano, Claudia Cava, Davide Garolini, Thais S Sabedot, Tathiane M Malta, Stefano M Pagnotta, Isabella Castiglioni,[...]. Nucleic Acids Res 2016
100

Familial Melanoma: Diagnostic and Management Implications.
Mariarita Rossi, Cristina Pellegrini, Ludovica Cardelli, Valeria Ciciarelli, Lucia Di Nardo, Maria Concetta Fargnoli. Dermatol Pract Concept 2019
31
100

DOME: recommendations for supervised machine learning validation in biology.
Ian Walsh, Dmytro Fishman, Dario Garcia-Gasulla, Tiina Titma, Gianluca Pollastri, Jennifer Harrow, Fotis E Psomopoulos, Silvio C E Tosatto. Nat Methods 2021
36
100

Characterization of the CpG Island Hypermethylated Phenotype Subclass in Primary Melanomas.
Kathleen Conway, Yihsuan S Tsai, Sharon N Edmiston, Joel S Parker, Eloise A Parrish, Honglin Hao, Pei Fen Kuan, Glynis A Scott, Jill S Frank, Paul Googe,[...]. J Invest Dermatol 2022
3
100

Consensus of Melanoma Gene Expression Subtypes Converges on Biological Entities.
Martin Lauss, Jeremie Nsengimana, Johan Staaf, Julia Newton-Bishop, Göran Jönsson. J Invest Dermatol 2016
20
100

Homologous recombination deficiency status-based classification of high-grade serous ovarian carcinoma.
Hisamitsu Takaya, Hidekatsu Nakai, Shiro Takamatsu, Masaki Mandai, Noriomi Matsumura. Sci Rep 2020
77
100

Evaluation and comparison of multi-omics data integration methods for cancer subtyping.
Ran Duan, Lin Gao, Yong Gao, Yuxuan Hu, Han Xu, Mingfeng Huang, Kuo Song, Hongda Wang, Yongqiang Dong, Chaoqun Jiang,[...]. PLoS Comput Biol 2021
14
100

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
100

Loss of NF1 in cutaneous melanoma is associated with RAS activation and MEK dependence.
Moriah H Nissan, Christine A Pratilas, Alexis M Jones, Ricardo Ramirez, Helen Won, Cailian Liu, Shakuntala Tiwari, Li Kong, Aphrothiti J Hanrahan, Zhan Yao,[...]. Cancer Res 2014
205
100

BRCA Methylation Testing Identifies a Subset of Ovarian Carcinomas without Germline Variants That Can Benefit from PARP Inhibitor.
Nora Sahnane, Ileana Carnevali, Giorgio Formenti, Jvan Casarin, Sofia Facchi, Raffaella Bombelli, Eleonora Di Lauro, Domenico Memoli, Annamaria Salvati, Francesca Rizzo,[...]. Int J Mol Sci 2020
14
100

In silico prediction of blood cholesterol levels from genotype data.
Francesco Reggiani, Marco Carraro, Anna Belligoli, Marta Sanna, Chiara Dal Prà, Francesca Favaretto, Carlo Ferrari, Roberto Vettor, Silvio C E Tosatto. PLoS One 2020
1
100

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma.
Houtan Noushmehr, Daniel J Weisenberger, Kristin Diefes, Heidi S Phillips, Kanan Pujara, Benjamin P Berman, Fei Pan, Christopher E Pelloski, Erik P Sulman, Krishna P Bhat,[...]. Cancer Cell 2010
100

Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5.
Alexander Miguel Monzon, Marco Carraro, Luigi Chiricosta, Francesco Reggiani, James Han, Kivilcim Ozturk, Yanran Wang, Maximilian Miller, Yana Bromberg, Emidio Capriotti,[...]. Hum Mutat 2019
6
100

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Jacqueline MacArthur, Emily Bowler, Maria Cerezo, Laurent Gil, Peggy Hall, Emma Hastings, Heather Junkins, Aoife McMahon, Annalisa Milano, Joannella Morales,[...]. Nucleic Acids Res 2017
100

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
100

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.
A Gordon Robertson, Juliann Shih, Christina Yau, Ewan A Gibb, Junna Oba, Karen L Mungall, Julian M Hess, Vladislav Uzunangelov, Vonn Walter, Ludmila Danilova,[...]. Cancer Cell 2017
434
100

Similarity network fusion for aggregating data types on a genomic scale.
Bo Wang, Aziz M Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg. Nat Methods 2014
734
100

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.
Vinicius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger. Bioinformatics 2020
5
100

Uveal Melanoma Metastasis.
Ernesto Rossi, Michela Croce, Francesco Reggiani, Giovanni Schinzari, Marianna Ambrosio, Rosaria Gangemi, Giampaolo Tortora, Ulrich Pfeffer, Adriana Amaro. Cancers (Basel) 2021
10
100


Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation.
Gaia Andreoletti, Lipika R Pal, John Moult, Steven E Brenner. Hum Mutat 2019
31
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.