A citation-based method for searching scientific literature

Eleonora Melzi, Jordan R Willis, Krystal M Ma, Ying-Cing Lin, Sven Kratochvil, Zachary T Berndsen, Elise A Landais, Oleksandr Kalyuzhniy, Usha Nair, John Warner, Jon M Steichen, Anton Kalyuzhniy, Amber Le, Simone Pecetta, Manfredo Perez, Kathrin Kirsch, Stephanie R Weldon, Samantha Falcone, Sunny Himansu, Andrea Carfi, Devin Sok, Andrew B Ward, William R Schief, Facundo D Batista. Immunity 2022
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Automated molecular microscopy: the new Leginon system.
Christian Suloway, James Pulokas, Denis Fellmann, Anchi Cheng, Francisco Guerra, Joel Quispe, Scott Stagg, Clinton S Potter, Bridget Carragher. J Struct Biol 2005
100

A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies.
Rogier W Sanders, Ronald Derking, Albert Cupo, Jean-Philippe Julien, Anila Yasmeen, Natalia de Val, Helen J Kim, Claudia Blattner, Alba Torrents de la Peña, Jacob Korzun,[...]. PLoS Pathog 2013
640
100

Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.
Marie Pancera, Syed Shahzad-Ul-Hussan, Nicole A Doria-Rose, Jason S McLellan, Robert T Bailer, Kaifan Dai, Sandra Loesgen, Mark K Louder, Ryan P Staupe, Yongping Yang,[...]. Nat Struct Mol Biol 2013
216
100

A time- and cost-efficient system for high-level protein production in mammalian cells.
A Radu Aricescu, Weixian Lu, E Yvonne Jones. Acta Crystallogr D Biol Crystallogr 2006
529
100

Site-Specific Steric Control of SARS-CoV-2 Spike Glycosylation.
Joel D Allen, Himanshi Chawla, Firdaus Samsudin, Lorena Zuzic, Aishwary Tukaram Shivgan, Yasunori Watanabe, Wan-Ting He, Sean Callaghan, Ge Song, Peter Yong,[...]. Biochemistry 2021
25
100

Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens.
Robert K Abbott, Jeong Hyun Lee, Sergey Menis, Patrick Skog, Meghan Rossi, Takayuki Ota, Daniel W Kulp, Deepika Bhullar, Oleksandr Kalyuzhniy, Colin Havenar-Daughton,[...]. Immunity 2018
179
100

Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter.
Lin He, Jolene Diedrich, Yen-Yin Chu, John R Yates. Anal Chem 2015
158
100

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser. Nat Methods 2015
495
100

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
100

A quantitative analysis software tool for mass spectrometry-based proteomics.
Sung Kyu Park, John D Venable, Tao Xu, John R Yates. Nat Methods 2008
310
100


Global site-specific N-glycosylation analysis of HIV envelope glycoprotein.
Liwei Cao, Jolene K Diedrich, Daniel W Kulp, Matthias Pauthner, Lin He, Sung-Kyu Robin Park, Devin Sok, Ching Yao Su, Claire M Delahunty, Sergey Menis,[...]. Nat Commun 2017
124
100

The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen.
Colin Havenar-Daughton, Anita Sarkar, Daniel W Kulp, Laura Toy, Xiaozhen Hu, Isaiah Deresa, Oleksandr Kalyuzhniy, Kirti Kaushik, Amit A Upadhyay, Sergey Menis,[...]. Sci Transl Med 2018
70
100

SAbPred: a structure-based antibody prediction server.
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Claire Marks, Jaroslaw Nowak, Cristian Regep, Guy Georges, Sebastian Kelm, Bojana Popovic, Charlotte M Deane. Nucleic Acids Res 2016
74
100

Human anti-V3 HIV-1 monoclonal antibodies encoded by the VH5-51/VL lambda genes define a conserved antigenic structure.
Miroslaw K Gorny, Jared Sampson, Huiguang Li, Xunqing Jiang, Maxim Totrov, Xiao-Hong Wang, Constance Williams, Timothy O'Neal, Barbara Volsky, Liuzhe Li,[...]. PLoS One 2011
40
100

Anti-HIV B Cell lines as candidate vaccine biosensors.
Takayuki Ota, Colleen Doyle-Cooper, Anthony B Cooper, Michael Huber, Emilia Falkowska, Katherine J Doores, Lars Hangartner, Khoa Le, Devin Sok, Joseph Jardine,[...]. J Immunol 2012
49
100

SWISS-MODEL: homology modelling of protein structures and complexes.
Andrew Waterhouse, Martino Bertoni, Stefan Bienert, Gabriel Studer, Gerardo Tauriello, Rafal Gumienny, Florian T Heer, Tjaart A P de Beer, Christine Rempfer, Lorenza Bordoli,[...]. Nucleic Acids Res 2018
100

An IgG human monoclonal antibody that reacts with HIV-1/GP120, inhibits virus binding to cells, and neutralizes infection.
M R Posner, T Hideshima, T Cannon, M Mukherjee, K H Mayer, R A Byrn. J Immunol 1991
278
100

Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein.
Anna-Janina Behrens, Snezana Vasiljevic, Laura K Pritchard, David J Harvey, Rajinder S Andev, Stefanie A Krumm, Weston B Struwe, Albert Cupo, Abhinav Kumar, Nicole Zitzmann,[...]. Cell Rep 2016
185
100

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Fernando P Polack, Stephen J Thomas, Nicholas Kitchin, Judith Absalon, Alejandra Gurtman, Stephen Lockhart, John L Perez, Gonzalo Pérez Marc, Edson D Moreira, Cristiano Zerbini,[...]. N Engl J Med 2020
100

HIV-1 VACCINES. Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen.
Joseph G Jardine, Takayuki Ota, Devin Sok, Matthias Pauthner, Daniel W Kulp, Oleksandr Kalyuzhniy, Patrick D Skog, Theresa C Thinnes, Deepika Bhullar, Bryan Briney,[...]. Science 2015
267
100

ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
T Xu, S K Park, J D Venable, J A Wohlschlegel, J K Diedrich, D Cociorva, B Lu, L Liao, J Hewel, X Han,[...]. J Proteomics 2015
281
100

A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.
Jon M Steichen, Ying-Cing Lin, Colin Havenar-Daughton, Simone Pecetta, Gabriel Ozorowski, Jordan R Willis, Laura Toy, Devin Sok, Alessia Liguori, Sven Kratochvil,[...]. Science 2019
97
100

Crystal structure of PG16 and chimeric dissection with somatically related PG9: structure-function analysis of two quaternary-specific antibodies that effectively neutralize HIV-1.
Marie Pancera, Jason S McLellan, Xueling Wu, Jiang Zhu, Anita Changela, Stephen D Schmidt, Yongping Yang, Tongqing Zhou, Sanjay Phogat, John R Mascola,[...]. J Virol 2010
180
100

Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies.
Laura E McCoy, Marit J van Gils, Gabriel Ozorowski, Terrence Messmer, Bryan Briney, James E Voss, Daniel W Kulp, Matthew S Macauley, Devin Sok, Matthias Pauthner,[...]. Cell Rep 2016
159
100

Electron-Microscopy-Based Epitope Mapping Defines Specificities of Polyclonal Antibodies Elicited during HIV-1 BG505 Envelope Trimer Immunization.
Matteo Bianchi, Hannah L Turner, Bartek Nogal, Christopher A Cottrell, David Oyen, Matthias Pauthner, Raiza Bastidas, Rebecca Nedellec, Laura E McCoy, Ian A Wilson,[...]. Immunity 2018
100
100

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
100

Multiplexed CRISPR/CAS9-mediated engineering of pre-clinical mouse models bearing native human B cell receptors.
Xuesong Wang, Rashmi Ray, Sven Kratochvil, Eleonora Melzi, Ying-Cing Lin, Sophie Giguere, Liling Xu, John Warner, Diane Cheon, Alessia Liguori,[...]. EMBO J 2021
10
100

Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer.
Liwei Cao, Matthias Pauthner, Raiees Andrabi, Kimmo Rantalainen, Zachary Berndsen, Jolene K Diedrich, Sergey Menis, Devin Sok, Raiza Bastidas, Sung-Kyu Robin Park,[...]. Nat Commun 2018
83
100

Disassembly of HIV envelope glycoprotein trimer immunogens is driven by antibodies elicited via immunization.
Hannah L Turner, Raiees Andrabi, Christopher A Cottrell, Sara T Richey, Ge Song, Sean Callaghan, Fabio Anzanello, Tyson J Moyer, Wuhbet Abraham, Mariane Melo,[...]. Sci Adv 2021
18
100

Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.
Kimberly M Cirelli, Diane G Carnathan, Bartek Nogal, Jacob T Martin, Oscar L Rodriguez, Amit A Upadhyay, Chiamaka A Enemuo, Etse H Gebru, Yury Choe, Federico Viviano,[...]. Cell 2019
168
100

Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design.
Dennis R Burton, Lars Hangartner. Annu Rev Immunol 2016
368
100

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design.
Kimmo Rantalainen, Zachary T Berndsen, Sasha Murrell, Liwei Cao, Oluwarotimi Omorodion, Jonathan L Torres, Mengyu Wu, Jeffrey Umotoy, Jeffrey Copps, Pascal Poignard,[...]. Cell Rep 2018
35
100

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.
Dari Kimanius, Björn O Forsberg, Sjors Hw Scheres, Erik Lindahl. Elife 2016
679
100


Single-particle EM reveals extensive conformational variability of the Ltn1 E3 ligase.
Dmitry Lyumkis, Selom K Doamekpor, Mario H Bengtson, Joong-Won Lee, Tasha B Toro, Matthew D Petroski, Christopher D Lima, Clinton S Potter, Bridget Carragher, Claudio A P Joazeiro. Proc Natl Acad Sci U S A 2013
31
100

DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N-Glycoforms.
Sabyasachi Baboo, Jolene K Diedrich, Salvador Martínez-Bartolomé, Xiaoning Wang, Torben Schiffner, Bettina Groschel, William R Schief, James C Paulson, John R Yates. Anal Chem 2021
2
100



New Member of the V1V2-Directed CAP256-VRC26 Lineage That Shows Increased Breadth and Exceptional Potency.
Nicole A Doria-Rose, Jinal N Bhiman, Ryan S Roark, Chaim A Schramm, Jason Gorman, Gwo-Yu Chuang, Marie Pancera, Evan M Cale, Michael J Ernandes, Mark K Louder,[...]. J Virol 2015
159
100

Broad neutralization coverage of HIV by multiple highly potent antibodies.
Laura M Walker, Michael Huber, Katie J Doores, Emilia Falkowska, Robert Pejchal, Jean-Philippe Julien, Sheng-Kai Wang, Alejandra Ramos, Po-Ying Chan-Hui, Matthew Moyle,[...]. Nature 2011
100

The Chimpanzee SIV Envelope Trimer: Structure and Deployment as an HIV Vaccine Template.
Raiees Andrabi, Jesper Pallesen, Joel D Allen, Ge Song, Jinsong Zhang, Natalia de Val, Gavin Gegg, Katelyn Porter, Ching-Yao Su, Matthias Pauthner,[...]. Cell Rep 2019
21
100

Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding.
Daniel W Kulp, Jon M Steichen, Matthias Pauthner, Xiaozhen Hu, Torben Schiffner, Alessia Liguori, Christopher A Cottrell, Colin Havenar-Daughton, Gabriel Ozorowski, Erik Georgeson,[...]. Nat Commun 2017
97
100

Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine.
Lindsey R Baden, Hana M El Sahly, Brandon Essink, Karen Kotloff, Sharon Frey, Rick Novak, David Diemert, Stephen A Spector, Nadine Rouphael, C Buddy Creech,[...]. N Engl J Med 2021
100

Commonality despite exceptional diversity in the baseline human antibody repertoire.
Bryan Briney, Anne Inderbitzin, Collin Joyce, Dennis R Burton. Nature 2019
219
100

Improvements to the APBS biomolecular solvation software suite.
Elizabeth Jurrus, Dave Engel, Keith Star, Kyle Monson, Juan Brandi, Lisa E Felberg, David H Brookes, Leighton Wilson, Jiahui Chen, Karina Liles,[...]. Protein Sci 2018
656
100

Rational Design of DNA-Expressed Stabilized Native-Like HIV-1 Envelope Trimers.
Yoann Aldon, Paul F McKay, Joel Allen, Gabriel Ozorowski, Réka Felfödiné Lévai, Monica Tolazzi, Paul Rogers, Linling He, Natalia de Val, Katalin Fábián,[...]. Cell Rep 2018
34
100

HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen.
Joseph G Jardine, Daniel W Kulp, Colin Havenar-Daughton, Anita Sarkar, Bryan Briney, Devin Sok, Fabian Sesterhenn, June Ereño-Orbea, Oleksandr Kalyuzhniy, Isaiah Deresa,[...]. Science 2016
262
100

Coexistence of potent HIV-1 broadly neutralizing antibodies and antibody-sensitive viruses in a viremic controller.
Natalia T Freund, Haoqing Wang, Louise Scharf, Lilian Nogueira, Joshua A Horwitz, Yotam Bar-On, Jovana Golijanin, Stuart A Sievers, Devin Sok, Hui Cai,[...]. Sci Transl Med 2017
95
100

Murine Antibody Responses to Cleaved Soluble HIV-1 Envelope Trimers Are Highly Restricted in Specificity.
Joyce K Hu, Jordan C Crampton, Albert Cupo, Thomas Ketas, Marit J van Gils, Kwinten Sliepen, Steven W de Taeye, Devin Sok, Gabriel Ozorowski, Isaiah Deresa,[...]. J Virol 2015
102
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.