A citation-based method for searching scientific literature

D Ojala, J Montoya, G Attardi. Nature 1981
Times Cited: 1658







List of co-cited articles
875 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


MITOS: improved de novo metazoan mitochondrial genome annotation.
Matthias Bernt, Alexander Donath, Frank Jühling, Fabian Externbrink, Catherine Florentz, Guido Fritzsch, Joern Pütz, Martin Middendorf, Peter F Stadler. Mol Phylogenet Evol 2013
34

Animal mitochondrial genomes.
J L Boore. Nucleic Acids Res 1999
32

Sequence and organization of the human mitochondrial genome.
S Anderson, A T Bankier, B G Barrell, M H de Bruijn, A R Coulson, J Drouin, I C Eperon, D P Nierlich, B A Roe, F Sanger,[...]. Nature 1981
24


IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
23


PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.
Dong Zhang, Fangluan Gao, Ivan Jakovlić, Hong Zou, Jin Zhang, Wen X Li, Gui T Wang. Mol Ecol Resour 2020
462
22

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.
Fredrik Ronquist, Maxim Teslenko, Paul van der Mark, Daniel L Ayres, Aaron Darling, Sebastian Höhna, Bret Larget, Liang Liu, Marc A Suchard, John P Huelsenbeck. Syst Biol 2012
21

Animal mitochondrial DNA: structure and evolution.
D R Wolstenholme. Int Rev Cytol 1992
19


MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
18

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
377
17

The human mitochondrial transcriptome.
Tim R Mercer, Shane Neph, Marcel E Dinger, Joanna Crawford, Martin A Smith, Anne-Marie J Shearwood, Eric Haugen, Cameron P Bracken, Oliver Rackham, John A Stamatoyannopoulos,[...]. Cell 2011
481
17

RNA processing in human mitochondria.
Maria I G Lopez Sanchez, Tim R Mercer, Stefan M K Davies, Anne-Marie J Shearwood, Karoline K A Nygård, Tara R Richman, John S Mattick, Oliver Rackham, Aleksandra Filipovska. Cell Cycle 2011
159
15



Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly.
Oliver Rackham, Jakob D Busch, Stanka Matic, Stefan J Siira, Irina Kuznetsova, Ilian Atanassov, Judith A Ermer, Anne-Marie J Shearwood, Tara R Richman, James B Stewart,[...]. Cell Rep 2016
69
20

The CGView Server: a comparative genomics tool for circular genomes.
Jason R Grant, Paul Stothard. Nucleic Acids Res 2008
614
13

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Matthew Kearse, Richard Moir, Amy Wilson, Steven Stones-Havas, Matthew Cheung, Shane Sturrock, Simon Buxton, Alex Cooper, Sidney Markowitz, Chris Duran,[...]. Bioinformatics 2012
13

NOVOPlasty: de novo assembly of organelle genomes from whole genome data.
Nicolas Dierckxsens, Patrick Mardulyn, Guillaume Smits. Nucleic Acids Res 2017
12

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.
Robert Lanfear, Paul B Frandsen, April M Wright, Tereza Senfeld, Brett Calcott. Mol Biol Evol 2017
12


Involvement of human ELAC2 gene product in 3' end processing of mitochondrial tRNAs.
Lien K Brzezniak, Monika Bijata, Roman J Szczesny, Piotr P Stepien. RNA Biol 2011
118
11

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio, Sara Guirao-Rico, Pablo Librado, Sebastián E Ramos-Onsins, Alejandro Sánchez-Gracia. Mol Biol Evol 2017
11

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
11

Mitochondrial double-stranded RNA triggers antiviral signalling in humans.
Ashish Dhir, Somdutta Dhir, Lukasz S Borowski, Laura Jimenez, Michael Teitell, Agnès Rötig, Yanick J Crow, Gillian I Rice, Darragh Duffy, Christelle Tamby,[...]. Nature 2018
200
10

ModelFinder: fast model selection for accurate phylogenetic estimates.
Subha Kalyaanamoorthy, Bui Quang Minh, Thomas K F Wong, Arndt von Haeseler, Lars S Jermiin. Nat Methods 2017
10


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
9


MrBayes 3: Bayesian phylogenetic inference under mixed models.
Fredrik Ronquist, John P Huelsenbeck. Bioinformatics 2003
9



Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses.
Robert Lanfear, Brett Calcott, Simon Y W Ho, Stephane Guindon. Mol Biol Evol 2012
9

Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
283
9

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
9


Structure of the nuclease subunit of human mitochondrial RNase P.
Linda Reinhard, Sagar Sridhara, B Martin Hällberg. Nucleic Acids Res 2015
33
24

LRPPRC is necessary for polyadenylation and coordination of translation of mitochondrial mRNAs.
Benedetta Ruzzenente, Metodi D Metodiev, Anna Wredenberg, Ana Bratic, Chan Bae Park, Yolanda Cámara, Dusanka Milenkovic, Volker Zickermann, Rolf Wibom, Kjell Hultenby,[...]. EMBO J 2012
190
8


MRBAYES: Bayesian inference of phylogenetic trees.
J P Huelsenbeck, F Ronquist. Bioinformatics 2001
8

LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria.
Takeshi Chujo, Takayuki Ohira, Yuriko Sakaguchi, Naoki Goshima, Nobuo Nomura, Asuteka Nagao, Tsutomu Suzuki. Nucleic Acids Res 2012
107
8

Human mitochondrial RNA decay mediated by PNPase-hSuv3 complex takes place in distinct foci.
Lukasz S Borowski, Andrzej Dziembowski, Monika S Hejnowicz, Piotr P Stepien, Roman J Szczesny. Nucleic Acids Res 2013
117
8


The Pseudouridine Synthase RPUSD4 Is an Essential Component of Mitochondrial RNA Granules.
Sofia Zaganelli, Pedro Rebelo-Guiomar, Kinsey Maundrell, Agata Rozanska, Sandra Pierredon, Christopher A Powell, Alexis A Jourdain, Nicolas Hulo, Robert N Lightowlers, Zofia M Chrzanowska-Lightowlers,[...]. J Biol Chem 2017
43
16

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
7

A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesis.
Elisa Vilardo, Christa Nachbagauer, Aurélie Buzet, Andreas Taschner, Johann Holzmann, Walter Rossmanith. Nucleic Acids Res 2012
127
7

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.
Guanliang Meng, Yiyuan Li, Chentao Yang, Shanlin Liu. Nucleic Acids Res 2019
212
7


New views on strand asymmetry in insect mitochondrial genomes.
Shu-Jun Wei, Min Shi, Xue-Xin Chen, Michael J Sharkey, Cornelis van Achterberg, Gong-Yin Ye, Jun-Hua He. PLoS One 2010
150
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.