A citation-based method for searching scientific literature


List of co-cited articles
1218 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
59


Rapid spontaneous accessibility of nucleosomal DNA.
Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
441
43

Nucleosomes facilitate their own invasion.
Gu Li, Jonathan Widom. Nat Struct Mol Biol 2004
253
40


Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility.
Thuy T M Ngo, Qiucen Zhang, Ruobo Zhou, Jaya G Yodh, Taekjip Ha. Cell 2015
149
26

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome.
Michael A Hall, Alla Shundrovsky, Lu Bai, Robert M Fulbright, John T Lis, Michelle D Wang. Nat Struct Mol Biol 2009
249
24

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
954
23

Dynamics of nucleosome invasion by DNA binding proteins.
Hannah S Tims, Kaushik Gurunathan, Marcia Levitus, Jonathan Widom. J Mol Biol 2011
84
22

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
16

Nucleosome accessibility governed by the dimer/tetramer interface.
Vera Böhm, Aaron R Hieb, Andrew J Andrews, Alexander Gansen, Andrea Rocker, Katalin Tóth, Karolin Luger, Jörg Langowski. Nucleic Acids Res 2011
132
16

Regulation of the nucleosome unwrapping rate controls DNA accessibility.
Justin A North, John C Shimko, Sarah Javaid, Alex M Mooney, Matthew A Shoffner, Sean D Rose, Ralf Bundschuh, Richard Fishel, Jennifer J Ottesen, Michael G Poirier. Nucleic Acids Res 2012
74
21

spFRET using alternating excitation and FCS reveals progressive DNA unwrapping in nucleosomes.
W J A Koopmans, R Buning, T Schmidt, J van Noort. Biophys J 2009
84
19

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.
Abdenour Soufi, Meilin Fernandez Garcia, Artur Jaroszewicz, Nebiyu Osman, Matteo Pellegrini, Kenneth S Zaret. Cell 2015
340
15

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.
Maria L Kireeva, Wendy Walter, Vladimir Tchernajenko, Vladimir Bondarenko, Mikhail Kashlev, Vasily M Studitsky. Mol Cell 2002
303
15


Histone octamer rearranges to adapt to DNA unwrapping.
Silvija Bilokapic, Mike Strauss, Mario Halic. Nat Struct Mol Biol 2018
74
20

The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
766
14

A genomic code for nucleosome positioning.
Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, AnnChristine Thåström, Yair Field, Irene K Moore, Ji-Ping Z Wang, Jonathan Widom. Nature 2006
14


The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.
Makiko Iwafuchi-Doi, Greg Donahue, Akshay Kakumanu, Jason A Watts, Shaun Mahony, B Franklin Pugh, Dolim Lee, Klaus H Kaestner, Kenneth S Zaret. Mol Cell 2016
161
14

Nucleosome-mediated cooperativity between transcription factors.
Leonid A Mirny. Proc Natl Acad Sci U S A 2010
178
13

A map of nucleosome positions in yeast at base-pair resolution.
Kristin Brogaard, Liqun Xi, Ji-Ping Wang, Jonathan Widom. Nature 2012
277
13

Nucleosomes undergo slow spontaneous gaping.
Thuy T M Ngo, Taekjip Ha. Nucleic Acids Res 2015
32
40


New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
Karolin Luger, Mekonnen L Dechassa, David J Tremethick. Nat Rev Mol Cell Biol 2012
379
12

The DNA-encoded nucleosome organization of a eukaryotic genome.
Noam Kaplan, Irene K Moore, Yvonne Fondufe-Mittendorf, Andrea J Gossett, Desiree Tillo, Yair Field, Emily M LeProust, Timothy R Hughes, Jason D Lieb, Jonathan Widom,[...]. Nature 2009
827
12

Histone fold modifications control nucleosome unwrapping and disassembly.
Marek Simon, Justin A North, John C Shimko, Robert A Forties, Michelle B Ferdinand, Mridula Manohar, Meng Zhang, Richard Fishel, Jennifer J Ottesen, Michael G Poirier. Proc Natl Acad Sci U S A 2011
127
12

A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome.
Sijie Wei, Samantha J Falk, Ben E Black, Tae-Hee Lee. Nucleic Acids Res 2015
39
30

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.
Brent D Brower-Toland, Corey L Smith, Richard C Yeh, John T Lis, Craig L Peterson, Michelle D Wang. Proc Natl Acad Sci U S A 2002
302
12

The nucleosome family: dynamic and growing.
Jordanka Zlatanova, Thomas C Bishop, Jean-Marc Victor, Vaughn Jackson, Ken van Holde. Structure 2009
107
12

Subnucleosomal structures and nucleosome asymmetry across a genome.
Ho Sung Rhee, Alain R Bataille, Liye Zhang, B Franklin Pugh. Cell 2014
123
12

Effect of force on mononucleosomal dynamics.
Shirley Mihardja, Andrew J Spakowitz, Yongli Zhang, Carlos Bustamante. Proc Natl Acad Sci U S A 2006
134
12


Determinants of nucleosome positioning.
Kevin Struhl, Eran Segal. Nat Struct Mol Biol 2013
357
12

Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core.
Yujie Chen, Joshua M Tokuda, Traci Topping, Steve P Meisburger, Suzette A Pabit, Lisa M Gloss, Lois Pollack. Proc Natl Acad Sci U S A 2017
53
22

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.
Lisa Ann Cirillo, Frank Robert Lin, Isabel Cuesta, Dara Friedman, Michal Jarnik, Kenneth S Zaret. Mol Cell 2002
763
11

Nucleosomes accelerate transcription factor dissociation.
Yi Luo, Justin A North, Sean D Rose, Michael G Poirier. Nucleic Acids Res 2014
69
15

Single-pair FRET microscopy reveals mononucleosome dynamics.
W J A Koopmans, A Brehm, C Logie, T Schmidt, J van Noort. J Fluoresc 2007
80
13


Nucleosome arrays reveal the two-start organization of the chromatin fiber.
Benedetta Dorigo, Thomas Schalch, Alexandra Kulangara, Sylwia Duda, Rasmus R Schroeder, Timothy J Richmond. Science 2004
370
11

Reconstitution of nucleosome core particles from recombinant histones and DNA.
Pamela N Dyer, Raji S Edayathumangalam, Cindy L White, Yunhe Bao, Srinivas Chakravarthy, Uma M Muthurajan, Karolin Luger. Methods Enzymol 2004
481
11

Nucleosome disassembly intermediates characterized by single-molecule FRET.
Alexander Gansen, Alessandro Valeri, Florian Hauger, Suren Felekyan, Stanislav Kalinin, Katalin Tóth, Jörg Langowski, Claus A M Seidel. Proc Natl Acad Sci U S A 2009
123
11

Spontaneous access to DNA target sites in folded chromatin fibers.
Michael G Poirier, Malte Bussiek, Jörg Langowski, Jonathan Widom. J Mol Biol 2008
102
11

Preparation of nucleosome core particle from recombinant histones.
K Luger, T J Rechsteiner, T J Richmond. Methods Enzymol 1999
509
11

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions.
Alexey K Shaytan, Grigoriy A Armeev, Alexander Goncearenco, Victor B Zhurkin, David Landsman, Anna R Panchenko. J Mol Biol 2016
80
13

A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation.
Heinz Neumann, Susan M Hancock, Ruth Buning, Andrew Routh, Lynda Chapman, Joanna Somers, Tom Owen-Hughes, John van Noort, Daniela Rhodes, Jason W Chin. Mol Cell 2009
323
10

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.
Courtney Hodges, Lacramioara Bintu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante. Science 2009
240
10

The mechanics behind DNA sequence-dependent properties of the nucleosome.
Eugene Y D Chua, Dileep Vasudevan, Gabriela E Davey, Bin Wu, Curt A Davey. Nucleic Acids Res 2012
102
10

Nucleosome structure(s) and stability: variations on a theme.
Andrew J Andrews, Karolin Luger. Annu Rev Biophys 2011
165
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.