CoCites: A citation-based method for searching scientific literature

Base pairing between Escherichia coli RNase P RNA and its substrate.

L A Kirsebom, S G Svärd. EMBO J 1994
Times Cited: 184

List of co-cited articles
823 articles co-cited >1

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983

1736

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999

175

Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA.
S Niranjanakumari, T Stams, S M Crary, D W Christianson, C A Fierke. Proc Natl Acad Sci U S A 1998

139

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis.
C Massire, L Jaeger, E Westhof. J Mol Biol 1998

189

Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P.
Nathan H Zahler, Eric L Christian, Michael E Harris. RNA 2003

Ribonuclease P: unity and diversity in a tRNA processing ribozyme.
D N Frank, N R Pace. Annu Rev Biochem 1998

344

Multiple magnesium ions in the ribonuclease P reaction mechanism.
D Smith, N R Pace. Biochemistry 1993

205

The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5' leader sequence of pre-tRNAAsp.
S M Crary, S Niranjanakumari, C A Fierke. Biochemistry 1998

109

Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp.
J C Kurz, S Niranjanakumari, C A Fierke. Biochemistry 1998

139

Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005

157

Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P.
A Loria, T Pan. Biochemistry 1997

Interaction of the 3'-end of tRNA with ribonuclease P RNA.
B K Oh, N R Pace. Nucleic Acids Res 1994

124

The Ribonuclease P Database.
J W Brown. Nucleic Acids Res 1999

237

Probing of tertiary interactions in RNA: 2'-hydroxyl-base contacts between the RNase P RNA and pre-tRNA.
T Pan, A Loria, K Zhong. Proc Natl Acad Sci U S A 1995

Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.
S Busch, L A Kirsebom, H Notbohm, R K Hartmann. J Mol Biol 2000

Domain structure of the ribozyme from eubacterial ribonuclease P.
A Loria, T Pan. RNA 1996

149

Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007

121

Model substrates for an RNA enzyme.
W H McClain, C Guerrier-Takada, S Altman. Science 1987

246

Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination.
Mathias Brännvall, B M Fredrik Pettersson, Leif A Kirsebom. J Mol Biol 2003

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005

154

The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit.
Jeffrey C Kurz, Carol A Fierke. Biochemistry 2002

Molecular modeling of the three-dimensional structure of the bacterial RNase P holoenzyme.
Hsin-Yue Tsai, Benoît Masquida, Roopa Biswas, Eric Westhof, Venkat Gopalan. J Mol Biol 2003

Evolutionary variation in bacterial RNase P RNAs.
E S Haas, J W Brown. Nucleic Acids Res 1998

Recognition of the 5' leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P.
A Loria, T Pan. Biochemistry 1998

Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli.
K A Peck-Miller, S Altman. J Mol Biol 1991

122

The residue immediately upstream of the RNase P cleavage site is a positive determinant.
Mathias Brännvall, B M Fredrik Pettersson, Leif A Kirsebom. Biochimie 2002

Identification of the universally conserved core of ribonuclease P RNA.
J L Chen, N R Pace. RNA 1997

104

Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme.
E L Christian, N M Kaye, M E Harris. RNA 2000

Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site.
J M Warnecke, J P Fürste, W D Hardt, V A Erdmann, R K Hartmann. Proc Natl Acad Sci U S A 1996

108

The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain.
J Kufel, L A Kirsebom. RNA 1998

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.
Lei Sun, Frank E Campbell, Nathan H Zahler, Michael E Harris. EMBO J 2006

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nicholas J Reiter, Amy Osterman, Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Nature 2010

180

Guanosine 2-NH2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA.
C Heide, T Pfeiffer, J M Nolan, R K Hartmann. RNA 1999

Different cleavage sites are aligned differently in the active site of M1 RNA, the catalytic subunit of Escherichia coli RNase P.
J Kufel, L A Kirsebom. Proc Natl Acad Sci U S A 1996

Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.
T Pan. Biochemistry 1995

130

Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate.
S G Svärd, U Kagardt, L A Kirsebom. RNA 1996

The pre-tRNA nucleotide base and 2'-hydroxyl at N(-1) contribute to fidelity in tRNA processing by RNase P.
Nathan H Zahler, Lei Sun, Eric L Christian, Michael E Harris. J Mol Biol 2005

Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage.
Mathias Brännvall, Ema Kikovska, Leif A Kirsebom. Nucleic Acids Res 2004

Protein activation of a ribozyme: the role of bacterial RNase P protein.
Amy H Buck, Andrew B Dalby, Alexander W Poole, Alexei V Kazantsev, Norman R Pace. EMBO J 2005

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008

363

Participation of the 3'-CCA of tRNA in the binding of catalytic Mg2+ ions by ribonuclease P.
B K Oh, D N Frank, N R Pace. Biochemistry 1998

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp.
J A Beebe, J C Kurz, C A Fierke. Biochemistry 1996

Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme.
A Loria, S Niranjanakumari, C A Fierke, T Pan. Biochemistry 1998

Structural perspective on the activation of RNAse P RNA by protein.
Amy H Buck, Alexei V Kazantsev, Andrew B Dalby, Norman R Pace. Nat Struct Mol Biol 2005

Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs.
J L Chen, J M Nolan, M E Harris, N R Pace. EMBO J 1998

103

Ribonuclease P protein structure: evolutionary origins in the translational apparatus.
T Stams, S Niranjanakumari, C A Fierke, D W Christianson. Science 1998

128

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P.
J A Beebe, C A Fierke. Biochemistry 1994

135

Manganese ions induce miscleavage in the Escherichia coli RNase P RNA-catalyzed reaction.
M Brännvall, L A Kirsebom. J Mol Biol 1999

Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis.
J M Warnecke, R Held, S Busch, R K Hartmann. J Mol Biol 1999

The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site.
A Loria, T Pan. Biochemistry 1999

Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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