J L Pellequer, E Westhof, M H Van Regenmortel. Immunol Lett 1993
Times Cited: 120
Times Cited: 120
Times Cited
Times Co-cited
Similarity
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites.
J M Parker, D Guo, R S Hodges. Biochemistry 1986
J M Parker, D Guo, R S Hodges. Biochemistry 1986
75
A semi-empirical method for prediction of antigenic determinants on protein antigens.
A S Kolaskar, P C Tongaonkar. FEBS Lett 1990
A S Kolaskar, P C Tongaonkar. FEBS Lett 1990
64
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.
Sudipto Saha, G P S Raghava. Proteins 2006
Sudipto Saha, G P S Raghava. Proteins 2006
62
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide.
E A Emini, J V Hughes, D S Perlow, J Boger. J Virol 1985
E A Emini, J V Hughes, D S Perlow, J Boger. J Virol 1985
55
Improved method for predicting linear B-cell epitopes.
Jens Erik Pontoppidan Larsen, Ole Lund, Morten Nielsen. Immunome Res 2006
Jens Erik Pontoppidan Larsen, Ole Lund, Morten Nielsen. Immunome Res 2006
54
Prediction of protein antigenic determinants from amino acid sequences.
T P Hopp, K R Woods. Proc Natl Acad Sci U S A 1981
T P Hopp, K R Woods. Proc Natl Acad Sci U S A 1981
50
Benchmarking B cell epitope prediction: underperformance of existing methods.
Martin J Blythe, Darren R Flower. Protein Sci 2005
Martin J Blythe, Darren R Flower. Protein Sci 2005
44
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures.
Pernille Haste Andersen, Morten Nielsen, Ole Lund. Protein Sci 2006
Pernille Haste Andersen, Morten Nielsen, Ole Lund. Protein Sci 2006
42
Predicting linear B-cell epitopes using string kernels.
Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. J Mol Recognit 2008
Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. J Mol Recognit 2008
42
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.
J Chen, H Liu, J Yang, K-C Chou. Amino Acids 2007
J Chen, H Liu, J Yang, K-C Chou. Amino Acids 2007
41
Predictive estimation of protein linear epitopes by using the program PEOPLE.
A J Alix. Vaccine 1999
A J Alix. Vaccine 1999
33
BEPITOPE: predicting the location of continuous epitopes and patterns in proteins.
Michael Odorico, Jean-Luc Pellequer. J Mol Recognit 2003
Michael Odorico, Jean-Luc Pellequer. J Mol Recognit 2003
32
CEP: a conformational epitope prediction server.
Urmila Kulkarni-Kale, Shriram Bhosle, A S Kolaskar. Nucleic Acids Res 2005
Urmila Kulkarni-Kale, Shriram Bhosle, A S Kolaskar. Nucleic Acids Res 2005
30
Bcipep: a database of B-cell epitopes.
Sudipto Saha, Manoj Bhasin, Gajendra P S Raghava. BMC Genomics 2005
Sudipto Saha, Manoj Bhasin, Gajendra P S Raghava. BMC Genomics 2005
28
Predicting location of continuous epitopes in proteins from their primary structures.
J L Pellequer, E Westhof, M H Van Regenmortel. Methods Enzymol 1991
J L Pellequer, E Westhof, M H Van Regenmortel. Methods Enzymol 1991
27
ElliPro: a new structure-based tool for the prediction of antibody epitopes.
Julia Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E Bourne, Alessandro Sette, Bjoern Peters. BMC Bioinformatics 2008
Julia Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E Bourne, Alessandro Sette, Bjoern Peters. BMC Bioinformatics 2008
27
COBEpro: a novel system for predicting continuous B-cell epitopes.
Michael J Sweredoski, Pierre Baldi. Protein Eng Des Sel 2009
Michael J Sweredoski, Pierre Baldi. Protein Eng Des Sel 2009
26
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
Jason A Greenbaum, Pernille Haste Andersen, Martin Blythe, Huynh-Hoa Bui, Raul E Cachau, James Crowe, Matthew Davies, A S Kolaskar, Ole Lund, Sherrie Morrison,[...]. J Mol Recognit 2007
Jason A Greenbaum, Pernille Haste Andersen, Martin Blythe, Huynh-Hoa Bui, Raul E Cachau, James Crowe, Matthew Davies, A S Kolaskar, Ole Lund, Sherrie Morrison,[...]. J Mol Recognit 2007
25
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure.
Michael J Sweredoski, Pierre Baldi. Bioinformatics 2008
Michael J Sweredoski, Pierre Baldi. Bioinformatics 2008
25
Machine learning approaches for prediction of linear B-cell epitopes on proteins.
Johannes Söllner, Bernd Mayer. J Mol Recognit 2006
Johannes Söllner, Bernd Mayer. J Mol Recognit 2006
40
Epitopia: a web-server for predicting B-cell epitopes.
Nimrod D Rubinstein, Itay Mayrose, Eric Martz, Tal Pupko. BMC Bioinformatics 2009
Nimrod D Rubinstein, Itay Mayrose, Eric Martz, Tal Pupko. BMC Bioinformatics 2009
22
Identification of conformational B-cell Epitopes in an antigen from its primary sequence.
Hifzur Rahman Ansari, Gajendra Ps Raghava. Immunome Res 2010
Hifzur Rahman Ansari, Gajendra Ps Raghava. Immunome Res 2010
22
Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins.
P K Ponnuswamy, M Prabhakaran, P Manavalan. Biochim Biophys Acta 1980
P K Ponnuswamy, M Prabhakaran, P Manavalan. Biochim Biophys Acta 1980
21
Antibody-protein interactions: benchmark datasets and prediction tools evaluation.
Julia V Ponomarenko, Philip E Bourne. BMC Struct Biol 2007
Julia V Ponomarenko, Philip E Bourne. BMC Struct Biol 2007
21
Recent advances in B-cell epitope prediction methods.
Yasser El-Manzalawy, Vasant Honavar. Immunome Res 2010
Yasser El-Manzalawy, Vasant Honavar. Immunome Res 2010
20
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
18
SVMTriP: a method to predict antigenic epitopes using support vector machine to integrate tri-peptide similarity and propensity.
Bo Yao, Lin Zhang, Shide Liang, Chi Zhang. PLoS One 2012
Bo Yao, Lin Zhang, Shide Liang, Chi Zhang. PLoS One 2012
18
Improved method for linear B-cell epitope prediction using antigen's primary sequence.
Harinder Singh, Hifzur Rahman Ansari, Gajendra P S Raghava. PLoS One 2013
Harinder Singh, Hifzur Rahman Ansari, Gajendra P S Raghava. PLoS One 2013
18
30
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results.
Shide Liang, Dandan Zheng, Daron M Standley, Bo Yao, Martin Zacharias, Chi Zhang. BMC Bioinformatics 2010
Shide Liang, Dandan Zheng, Daron M Standley, Bo Yao, Martin Zacharias, Chi Zhang. BMC Bioinformatics 2010
19
BEST: improved prediction of B-cell epitopes from antigen sequences.
Jianzhao Gao, Eshel Faraggi, Yaoqi Zhou, Jishou Ruan, Lukasz Kurgan. PLoS One 2012
Jianzhao Gao, Eshel Faraggi, Yaoqi Zhou, Jishou Ruan, Lukasz Kurgan. PLoS One 2012
30
SEPPA: a computational server for spatial epitope prediction of protein antigens.
Jing Sun, Di Wu, Tianlei Xu, Xiaojing Wang, Xiaolian Xu, Lin Tao, Y X Li, Z W Cao. Nucleic Acids Res 2009
Jing Sun, Di Wu, Tianlei Xu, Xiaojing Wang, Xiaolian Xu, Lin Tao, Y X Li, Z W Cao. Nucleic Acids Res 2009
16
Continuous and discontinuous protein antigenic determinants.
D J Barlow, M S Edwards, J M Thornton. Nature 1986
D J Barlow, M S Edwards, J M Thornton. Nature 1986
15
A machine-learning approach for predicting B-cell epitopes.
Nimrod D Rubinstein, Itay Mayrose, Tal Pupko. Mol Immunol 2009
Nimrod D Rubinstein, Itay Mayrose, Tal Pupko. Mol Immunol 2009
19
The immune epitope database 2.0.
Randi Vita, Laura Zarebski, Jason A Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Bjoern Peters. Nucleic Acids Res 2010
Randi Vita, Laura Zarebski, Jason A Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Bjoern Peters. Nucleic Acids Res 2010
14
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction.
Lawrence J K Wee, Diane Simarmata, Yiu-Wing Kam, Lisa F P Ng, Joo Chuan Tong. BMC Genomics 2010
Lawrence J K Wee, Diane Simarmata, Yiu-Wing Kam, Lisa F P Ng, Joo Chuan Tong. BMC Genomics 2010
28
Reliable B cell epitope predictions: impacts of method development and improved benchmarking.
Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund, Morten Nielsen. PLoS Comput Biol 2012
Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund, Morten Nielsen. PLoS Comput Biol 2012
14
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.
Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili. Nucleic Acids Res 2017
Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili. Nucleic Acids Res 2017
14
The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
13
Location of 'continuous' antigenic determinants in the protruding regions of proteins.
J M Thornton, M S Edwards, W R Taylor, D J Barlow. EMBO J 1986
J M Thornton, M S Edwards, W R Taylor, D J Barlow. EMBO J 1986
12
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature.
Wen Zhang, Yi Xiong, Meng Zhao, Hua Zou, Xinghuo Ye, Juan Liu. BMC Bioinformatics 2011
Wen Zhang, Yi Xiong, Meng Zhao, Hua Zou, Xinghuo Ye, Juan Liu. BMC Bioinformatics 2011
19
Prediction of sequential antigenic regions in proteins.
G W Welling, W J Weijer, R van der Zee, S Welling-Wester. FEBS Lett 1985
G W Welling, W J Weijer, R van der Zee, S Welling-Wester. FEBS Lett 1985
11
Computational characterization of B-cell epitopes.
Nimrod D Rubinstein, Itay Mayrose, Dan Halperin, Daniel Yekutieli, Jonathan M Gershoni, Tal Pupko. Mol Immunol 2008
Nimrod D Rubinstein, Itay Mayrose, Dan Halperin, Daniel Yekutieli, Jonathan M Gershoni, Tal Pupko. Mol Immunol 2008
11
Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification.
Hsin-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Hao-Teng Chang. J Biomed Biotechnol 2011
Hsin-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Hao-Teng Chang. J Biomed Biotechnol 2011
22
Structural analysis of B-cell epitopes in antibody:protein complexes.
Jens Vindahl Kringelum, Morten Nielsen, Søren Berg Padkjær, Ole Lund. Mol Immunol 2013
Jens Vindahl Kringelum, Morten Nielsen, Søren Berg Padkjær, Ole Lund. Mol Immunol 2013
11
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data.
Christopher P Toseland, Debra J Clayton, Helen McSparron, Shelley L Hemsley, Martin J Blythe, Kelly Paine, Irini A Doytchinova, Pingping Guan, Channa K Hattotuwagama, Darren R Flower. Immunome Res 2005
Christopher P Toseland, Debra J Clayton, Helen McSparron, Shelley L Hemsley, Martin J Blythe, Kelly Paine, Irini A Doytchinova, Pingping Guan, Channa K Hattotuwagama, Darren R Flower. Immunome Res 2005
10
Immunoinformatics may lead to a reappraisal of the nature of B cell epitopes and of the feasibility of synthetic peptide vaccines.
Marc H V Van Regenmortel. J Mol Recognit 2006
Marc H V Van Regenmortel. J Mol Recognit 2006
14
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.