A citation-based method for searching scientific literature

G N Filippova, S Fagerlie, E M Klenova, C Myers, Y Dehner, G Goodwin, P E Neiman, S J Collins, V V Lobanenkov. Mol Cell Biol 1996
Times Cited: 403







List of co-cited articles
869 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
41

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
37

CTCF: an architectural protein bridging genome topology and function.
Chin-Tong Ong, Victor G Corces. Nat Rev Genet 2014
574
31

CTCF: master weaver of the genome.
Jennifer E Phillips, Victor G Corces. Cell 2009
30

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
Tae Hoon Kim, Ziedulla K Abdullaev, Andrew D Smith, Keith A Ching, Dmitri I Loukinov, Roland D Green, Michael Q Zhang, Victor V Lobanenkov, Bing Ren. Cell 2007
729
27

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.
Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang,[...]. Cell 2015
491
26


Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
25

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
25

Widespread plasticity in CTCF occupancy linked to DNA methylation.
Hao Wang, Matthew T Maurano, Hongzhu Qu, Katherine E Varley, Jason Gertz, Florencia Pauli, Kristen Lee, Theresa Canfield, Molly Weaver, Richard Sandstrom,[...]. Genome Res 2012
339
24

CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms.
E M Klenova, R H Nicolas, H F Paterson, A F Carne, C M Heath, G H Goodwin, P E Neiman, V V Lobanenkov. Mol Cell Biol 1993
212
24

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li,[...]. Proc Natl Acad Sci U S A 2015
766
24

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages.
Dominic Schmidt, Petra C Schwalie, Michael D Wilson, Benoit Ballester, Angela Gonçalves, Claudia Kutter, Gordon D Brown, Aileen Marshall, Paul Flicek, Duncan T Odom. Cell 2012
336
23

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
942
23

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.
Matteo Vietri Rudan, Christopher Barrington, Stephen Henderson, Christina Ernst, Duncan T Odom, Amos Tanay, Suzana Hadjur. Cell Rep 2015
376
23

CTCF Binding Polarity Determines Chromatin Looping.
Elzo de Wit, Erica S M Vos, Sjoerd J B Holwerda, Christian Valdes-Quezada, Marjon J A M Verstegen, Hans Teunissen, Erik Splinter, Patrick J Wijchers, Peter H L Krijger, Wouter de Laat. Mol Cell 2015
295
23

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
721
22

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus.
Erik Splinter, Helen Heath, Jurgen Kooren, Robert-Jan Palstra, Petra Klous, Frank Grosveld, Niels Galjart, Wouter de Laat. Genes Dev 2006
493
22

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
22


Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.
Jessica Zuin, Jesse R Dixon, Michael I J A van der Reijden, Zhen Ye, Petros Kolovos, Rutger W W Brouwer, Mariëtte P C van de Corput, Harmen J G van de Werken, Tobias A Knoch, Wilfred F J van IJcken,[...]. Proc Natl Acad Sci U S A 2014
471
20

Cohesin mediates transcriptional insulation by CCCTC-binding factor.
Kerstin S Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro,[...]. Nature 2008
809
20

CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus.
A T Hark, C J Schoenherr, D J Katz, R S Ingram, J M Levorse, S M Tilghman. Nature 2000
20


A genome-wide map of CTCF multivalency redefines the CTCF code.
Hirotaka Nakahashi, Kyong-Rim Kieffer Kwon, Wolfgang Resch, Laura Vian, Marei Dose, Diana Stavreva, Ofir Hakim, Nathanael Pruett, Steevenson Nelson, Arito Yamane,[...]. Cell Rep 2013
175
19

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Zhonghui Tang, Oscar Junhong Luo, Xingwang Li, Meizhen Zheng, Jacqueline Jufen Zhu, Przemyslaw Szalaj, Pawel Trzaskoma, Adriana Magalska, Jakub Wlodarczyk, Blazej Ruszczycki,[...]. Cell 2015
482
19

Cohesins functionally associate with CTCF on mammalian chromosome arms.
Vania Parelho, Suzana Hadjur, Mikhail Spivakov, Marion Leleu, Stephan Sauer, Heather C Gregson, Adam Jarmuz, Claudia Canzonetta, Zoe Webster, Tatyana Nesterova,[...]. Cell 2008
631
18

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.
Jill M Dowen, Zi Peng Fan, Denes Hnisz, Gang Ren, Brian J Abraham, Lyndon N Zhang, Abraham S Weintraub, Jurian Schujiers, Tong Ihn Lee, Keji Zhao,[...]. Cell 2014
506
18

Architectural protein subclasses shape 3D organization of genomes during lineage commitment.
Jennifer E Phillips-Cremins, Michael E G Sauria, Amartya Sanyal, Tatiana I Gerasimova, Bryan R Lajoie, Joshua S K Bell, Chin-Tong Ong, Tracy A Hookway, Changying Guo, Yuhua Sun,[...]. Cell 2013
720
17

Insulator dysfunction and oncogene activation in IDH mutant gliomas.
William A Flavahan, Yotam Drier, Brian B Liau, Shawn M Gillespie, Andrew S Venteicher, Anat O Stemmer-Rachamimov, Mario L Suvà, Bradley E Bernstein. Nature 2016
592
17


Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains.
Suresh Cuddapah, Raja Jothi, Dustin E Schones, Tae-Young Roh, Kairong Cui, Keji Zhao. Genome Res 2009
455
16


Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
667
15

CTCF/cohesin-binding sites are frequently mutated in cancer.
Riku Katainen, Kashyap Dave, Esa Pitkänen, Kimmo Palin, Teemu Kivioja, Niko Välimäki, Alexandra E Gylfe, Heikki Ristolainen, Ulrika A Hänninen, Tatiana Cajuso,[...]. Nat Genet 2015
235
14

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.
Sanjeev Shukla, Ersen Kavak, Melissa Gregory, Masahiko Imashimizu, Bojan Shutinoski, Mikhail Kashlev, Philipp Oberdoerffer, Rickard Sandberg, Shalini Oberdoerffer. Nature 2011
632
13

CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53.
Ricardo Saldaña-Meyer, Edgar González-Buendía, Georgina Guerrero, Varun Narendra, Roberto Bonasio, Félix Recillas-Targa, Danny Reinberg. Genes Dev 2014
112
13

CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer.
Christopher J Kemp, James M Moore, Russell Moser, Brady Bernard, Matt Teater, Leslie E Smith, Natalia A Rabaia, Kay E Gurley, Justin Guinney, Stephanie E Busch,[...]. Cell Rep 2014
104
13

CTCF physically links cohesin to chromatin.
Eric D Rubio, David J Reiss, Piri L Welcsh, Christine M Disteche, Galina N Filippova, Nitin S Baliga, Ruedi Aebersold, Jeffrey A Ranish, Anton Krumm. Proc Natl Acad Sci U S A 2008
359
13

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation.
Varun Narendra, Pedro P Rocha, Disi An, Ramya Raviram, Jane A Skok, Esteban O Mazzoni, Danny Reinberg. Science 2015
306
13


Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
13

Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci.
Mario Renda, Ilaria Baglivo, Bonnie Burgess-Beusse, Sabrina Esposito, Roberto Fattorusso, Gary Felsenfeld, Paolo V Pedone. J Biol Chem 2007
108
12

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
Xiaohui Xie, Tarjei S Mikkelsen, Andreas Gnirke, Kerstin Lindblad-Toh, Manolis Kellis, Eric S Lander. Proc Natl Acad Sci U S A 2007
221
12

A map of the cis-regulatory sequences in the mouse genome.
Yin Shen, Feng Yue, David F McCleary, Zhen Ye, Lee Edsall, Samantha Kuan, Ulrich Wagner, Jesse Dixon, Leonard Lee, Victor V Lobanenkov,[...]. Nature 2012
904
12

CTCF-mediated functional chromatin interactome in pluripotent cells.
Lusy Handoko, Han Xu, Guoliang Li, Chew Yee Ngan, Elaine Chew, Marie Schnapp, Charlie Wah Heng Lee, Chaopeng Ye, Joanne Lim Hui Ping, Fabianus Mulawadi,[...]. Nat Genet 2011
454
12

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
12


Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus.
Suzana Hadjur, Luke M Williams, Natalie K Ryan, Bradley S Cobb, Tom Sexton, Peter Fraser, Amanda G Fisher, Matthias Merkenschlager. Nature 2009
387
11

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.