J H Cate, A R Gooding, E Podell, K Zhou, B L Golden, C E Kundrot, T R Cech, J A Doudna. Science 1996
Times Cited: 1094
Times Cited: 1094
Times Cited
Times Co-cited
Similarity
RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.
P Nissen, J A Ippolito, N Ban, P B Moore, T A Steitz. Proc Natl Acad Sci U S A 2001
P Nissen, J A Ippolito, N Ban, P B Moore, T A Steitz. Proc Natl Acad Sci U S A 2001
23
16
The noncoding RNA revolution-trashing old rules to forge new ones.
Thomas R Cech, Joan A Steitz. Cell 2014
Thomas R Cech, Joan A Steitz. Cell 2014
15
Control of memory formation through regulated expression of a CaMKII transgene.
M Mayford, M E Bach, Y Y Huang, L Wang, R D Hawkins, E R Kandel. Science 1996
M Mayford, M E Bach, Y Y Huang, L Wang, R D Hawkins, E R Kandel. Science 1996
15
Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors.
Cody Geary, Stéphanie Baudrey, Luc Jaeger. Nucleic Acids Res 2008
Cody Geary, Stéphanie Baudrey, Luc Jaeger. Nucleic Acids Res 2008
18
The kink-turn: a new RNA secondary structure motif.
D J Klein, T M Schmeing, P B Moore, T A Steitz. EMBO J 2001
D J Klein, T M Schmeing, P B Moore, T A Steitz. EMBO J 2001
13
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data.
Marc Parisien, François Major. Nature 2008
Marc Parisien, François Major. Nature 2008
12
Crystal structure of a self-spliced group II intron.
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
12
RNA tertiary structure mediation by adenosine platforms.
J H Cate, A R Gooding, E Podell, K Zhou, B L Golden, A A Szewczak, C E Kundrot, T R Cech, J A Doudna. Science 1996
J H Cate, A R Gooding, E Podell, K Zhou, B L Golden, A A Szewczak, C E Kundrot, T R Cech, J A Doudna. Science 1996
11
Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers.
Alberto Pérez, Iván Marchán, Daniel Svozil, Jiri Sponer, Thomas E Cheatham, Charles A Laughton, Modesto Orozco. Biophys J 2007
Alberto Pérez, Iván Marchán, Daniel Svozil, Jiri Sponer, Thomas E Cheatham, Charles A Laughton, Modesto Orozco. Biophys J 2007
11
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
11
11
Understanding nucleic acid-ion interactions.
Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag. Annu Rev Biochem 2014
Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag. Annu Rev Biochem 2014
10
Metal-ion rescue revisited: biochemical detection of site-bound metal ions important for RNA folding.
John K Frederiksen, Nan-Sheng Li, Rhiju Das, Daniel Herschlag, Joseph A Piccirilli. RNA 2012
John K Frederiksen, Nan-Sheng Li, Rhiju Das, Daniel Herschlag, Joseph A Piccirilli. RNA 2012
35
DSSR: an integrated software tool for dissecting the spatial structure of RNA.
Xiang-Jun Lu, Harmen J Bussemaker, Wilma K Olson. Nucleic Acids Res 2015
Xiang-Jun Lu, Harmen J Bussemaker, Wilma K Olson. Nucleic Acids Res 2015
10
A preorganized active site in the crystal structure of the Tetrahymena ribozyme.
B L Golden, A R Gooding, E R Podell, T R Cech. Science 1998
B L Golden, A R Gooding, E R Podell, T R Cech. Science 1998
10
Atomic accuracy in predicting and designing noncanonical RNA structure.
Rhiju Das, John Karanicolas, David Baker. Nat Methods 2010
Rhiju Das, John Karanicolas, David Baker. Nat Methods 2010
9
Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.
Jose H Hodak, Christopher D Downey, Julie L Fiore, Arthur Pardi, David J Nesbitt. Proc Natl Acad Sci U S A 2005
Jose H Hodak, Christopher D Downey, Julie L Fiore, Arthur Pardi, David J Nesbitt. Proc Natl Acad Sci U S A 2005
11
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
Zhichao Miao, Ryszard W Adamiak, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Cheng, Grzegorz Chojnowski, Fang-Chieh Chou, Pablo Cordero,[...]. RNA 2015
Zhichao Miao, Ryszard W Adamiak, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Cheng, Grzegorz Chojnowski, Fang-Chieh Chou, Pablo Cordero,[...]. RNA 2015
9
The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
Samuel E Butcher, Anna Marie Pyle. Acc Chem Res 2011
Samuel E Butcher, Anna Marie Pyle. Acc Chem Res 2011
9
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.
F Michel, E Westhof. J Mol Biol 1990
F Michel, E Westhof. J Mol Biol 1990
9
An RNA folding motif: GNRA tetraloop-receptor interactions.
Julie L Fiore, David J Nesbitt. Q Rev Biophys 2013
Julie L Fiore, David J Nesbitt. Q Rev Biophys 2013
18
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Zhichao Miao, Ryszard W Adamiak, Maciej Antczak, Robert T Batey, Alexander J Becka, Marcin Biesiada, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng,[...]. RNA 2017
Zhichao Miao, Ryszard W Adamiak, Maciej Antczak, Robert T Batey, Alexander J Becka, Marcin Biesiada, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng,[...]. RNA 2017
9
Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech. Cell 1982
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech. Cell 1982
8
Automated de novo prediction of native-like RNA tertiary structures.
Rhiju Das, David Baker. Proc Natl Acad Sci U S A 2007
Rhiju Das, David Baker. Proc Natl Acad Sci U S A 2007
8
RNA folding: conformational statistics, folding kinetics, and ion electrostatics.
Shi-Jie Chen. Annu Rev Biophys 2008
Shi-Jie Chen. Annu Rev Biophys 2008
8
A magnesium ion core at the heart of a ribozyme domain.
J H Cate, R L Hanna, J A Doudna. Nat Struct Biol 1997
J H Cate, R L Hanna, J A Doudna. Nat Struct Biol 1997
8
Structural variation and uniformity among tetraloop-receptor interactions and other loop-helix interactions in RNA crystal structures.
Li Wu, Dinggeng Chai, Marie E Fraser, Steven Zimmerly. PLoS One 2012
Li Wu, Dinggeng Chai, Marie E Fraser, Steven Zimmerly. PLoS One 2012
40
Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations.
Keiji Takamoto, Rhiju Das, Qin He, Sebastian Doniach, Michael Brenowitz, Daniel Herschlag, Mark R Chance. J Mol Biol 2004
Keiji Takamoto, Rhiju Das, Qin He, Sebastian Doniach, Michael Brenowitz, Daniel Herschlag, Mark R Chance. J Mol Biol 2004
8
The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
8
Consistent global structures of complex RNA states through multidimensional chemical mapping.
Clarence Yu Cheng, Fang-Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das. Elife 2015
Clarence Yu Cheng, Fang-Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das. Elife 2015
16
Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
8
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme.
V Lehnert, L Jaeger, F Michel, E Westhof. Chem Biol 1996
V Lehnert, L Jaeger, F Michel, E Westhof. Chem Biol 1996
8
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
José Almeida Cruz, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V Dokholyan, Samuel Coulbourn Flores,[...]. RNA 2012
José Almeida Cruz, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V Dokholyan, Samuel Coulbourn Flores,[...]. RNA 2012
7
ModeRNA: a tool for comparative modeling of RNA 3D structure.
Magdalena Rother, Kristian Rother, Tomasz Puton, Janusz M Bujnicki. Nucleic Acids Res 2011
Magdalena Rother, Kristian Rother, Tomasz Puton, Janusz M Bujnicki. Nucleic Acids Res 2011
7
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
T Xia, J SantaLucia, M E Burkard, R Kierzek, S J Schroeder, X Jiao, C Cox, D H Turner. Biochemistry 1998
T Xia, J SantaLucia, M E Burkard, R Kierzek, S J Schroeder, X Jiao, C Cox, D H Turner. Biochemistry 1998
7
An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme.
F L Murphy, T R Cech. Biochemistry 1993
F L Murphy, T R Cech. Biochemistry 1993
7
Determining the Mg2+ stoichiometry for folding an RNA metal ion core.
Rhiju Das, Kevin J Travers, Yu Bai, Daniel Herschlag. J Am Chem Soc 2005
Rhiju Das, Kevin J Travers, Yu Bai, Daniel Herschlag. J Am Chem Soc 2005
9
Multiple native states reveal persistent ruggedness of an RNA folding landscape.
Sergey V Solomatin, Max Greenfeld, Steven Chu, Daniel Herschlag. Nature 2010
Sergey V Solomatin, Max Greenfeld, Steven Chu, Daniel Herschlag. Nature 2010
7
Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.
H W Pley, K M Flaherty, D B McKay. Nature 1994
H W Pley, K M Flaherty, D B McKay. Nature 1994
7
Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
7
Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops.
H A Heus, A Pardi. Science 1991
H A Heus, A Pardi. Science 1991
7
Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".
C R Woese, S Winker, R R Gutell. Proc Natl Acad Sci U S A 1990
C R Woese, S Winker, R R Gutell. Proc Natl Acad Sci U S A 1990
7
Crystal structure of the specificity domain of ribonuclease P.
Andrey S Krasilnikov, Xiaojing Yang, Tao Pan, Alfonso Mondragón. Nature 2003
Andrey S Krasilnikov, Xiaojing Yang, Tao Pan, Alfonso Mondragón. Nature 2003
7
Crystal structure of a hepatitis delta virus ribozyme.
A R Ferré-D'Amaré, K Zhou, J A Doudna. Nature 1998
A R Ferré-D'Amaré, K Zhou, J A Doudna. Nature 1998
7
Accurate SHAPE-directed RNA structure determination.
Katherine E Deigan, Tian W Li, David H Mathews, Kevin M Weeks. Proc Natl Acad Sci U S A 2009
Katherine E Deigan, Tian W Li, David H Mathews, Kevin M Weeks. Proc Natl Acad Sci U S A 2009
7
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.