A citation-based method for searching scientific literature

J H Cate, A R Gooding, E Podell, K Zhou, B L Golden, C E Kundrot, T R Cech, J A Doudna. Science 1996
Times Cited: 1094







List of co-cited articles
1001 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.
P Nissen, J A Ippolito, N Ban, P B Moore, T A Steitz. Proc Natl Acad Sci U S A 2001
497
23



Control of memory formation through regulated expression of a CaMKII transgene.
M Mayford, M E Bach, Y Y Huang, L Wang, R D Hawkins, E R Kandel. Science 1996
15

Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors.
Cody Geary, Stéphanie Baudrey, Luc Jaeger. Nucleic Acids Res 2008
71
18

The kink-turn: a new RNA secondary structure motif.
D J Klein, T M Schmeing, P B Moore, T A Steitz. EMBO J 2001
576
13


Crystal structure of a self-spliced group II intron.
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
339
12

RNA tertiary structure mediation by adenosine platforms.
J H Cate, A R Gooding, E Podell, K Zhou, B L Golden, A A Szewczak, C E Kundrot, T R Cech, J A Doudna. Science 1996
264
11

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers.
Alberto Pérez, Iván Marchán, Daniel Svozil, Jiri Sponer, Thomas E Cheatham, Charles A Laughton, Modesto Orozco. Biophys J 2007
11

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
N Ban, P Nissen, J Hansen, P B Moore, T A Steitz. Science 2000
11


Understanding nucleic acid-ion interactions.
Jan Lipfert, Sebastian Doniach, Rhiju Das, Daniel Herschlag. Annu Rev Biochem 2014
209
10

Metal-ion rescue revisited: biochemical detection of site-bound metal ions important for RNA folding.
John K Frederiksen, Nan-Sheng Li, Rhiju Das, Daniel Herschlag, Joseph A Piccirilli. RNA 2012
28
35

DSSR: an integrated software tool for dissecting the spatial structure of RNA.
Xiang-Jun Lu, Harmen J Bussemaker, Wilma K Olson. Nucleic Acids Res 2015
123
10

A preorganized active site in the crystal structure of the Tetrahymena ribozyme.
B L Golden, A R Gooding, E R Podell, T R Cech. Science 1998
249
10

Atomic accuracy in predicting and designing noncanonical RNA structure.
Rhiju Das, John Karanicolas, David Baker. Nat Methods 2010
223
9

Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET.
Jose H Hodak, Christopher D Downey, Julie L Fiore, Arthur Pardi, David J Nesbitt. Proc Natl Acad Sci U S A 2005
78
11

A guide to ions and RNA structure.
David E Draper. RNA 2004
393
9

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
Zhichao Miao, Ryszard W Adamiak, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Cheng, Grzegorz Chojnowski, Fang-Chieh Chou, Pablo Cordero,[...]. RNA 2015
112
9



An RNA folding motif: GNRA tetraloop-receptor interactions.
Julie L Fiore, David J Nesbitt. Q Rev Biophys 2013
50
18

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Zhichao Miao, Ryszard W Adamiak, Maciej Antczak, Robert T Batey, Alexander J Becka, Marcin Biesiada, Michał J Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Clarence Yu Cheng,[...]. RNA 2017
103
9

Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
K Kruger, P J Grabowski, A J Zaug, J Sands, D E Gottschling, T R Cech. Cell 1982
8

Automated de novo prediction of native-like RNA tertiary structures.
Rhiju Das, David Baker. Proc Natl Acad Sci U S A 2007
276
8


A magnesium ion core at the heart of a ribozyme domain.
J H Cate, R L Hanna, J A Doudna. Nat Struct Biol 1997
246
8


Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations.
Keiji Takamoto, Rhiju Das, Qin He, Sebastian Doniach, Michael Brenowitz, Daniel Herschlag, Mark R Chance. J Mol Biol 2004
93
8

RNA structure: reading the ribosome.
Harry F Noller. Science 2005
229
8

The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
8

Consistent global structures of complex RNA states through multidimensional chemical mapping.
Clarence Yu Cheng, Fang-Chieh Chou, Wipapat Kladwang, Siqi Tian, Pablo Cordero, Rhiju Das. Elife 2015
49
16

Structure of the 30S ribosomal subunit.
B T Wimberly, D E Brodersen, W M Clemons, R J Morgan-Warren, A P Carter, C Vonrhein, T Hartsch, V Ramakrishnan. Nature 2000
8


How RNA folds.
I Tinoco, C Bustamante. J Mol Biol 1999
579
8

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
José Almeida Cruz, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Shi-Jie Chen, Song Cao, Rhiju Das, Feng Ding, Nikolay V Dokholyan, Samuel Coulbourn Flores,[...]. RNA 2012
153
7

The dynamic landscapes of RNA architecture.
José Almeida Cruz, Eric Westhof. Cell 2009
211
7

ModeRNA: a tool for comparative modeling of RNA 3D structure.
Magdalena Rother, Kristian Rother, Tomasz Puton, Janusz M Bujnicki. Nucleic Acids Res 2011
149
7

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
T Xia, J SantaLucia, M E Burkard, R Kierzek, S J Schroeder, X Jiao, C Cox, D H Turner. Biochemistry 1998
799
7


Determining the Mg2+ stoichiometry for folding an RNA metal ion core.
Rhiju Das, Kevin J Travers, Yu Bai, Daniel Herschlag. J Am Chem Soc 2005
76
9

Multiple native states reveal persistent ruggedness of an RNA folding landscape.
Sergey V Solomatin, Max Greenfeld, Steven Chu, Daniel Herschlag. Nature 2010
146
7


Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
7


Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".
C R Woese, S Winker, R R Gutell. Proc Natl Acad Sci U S A 1990
431
7

Crystal structure of the specificity domain of ribonuclease P.
Andrey S Krasilnikov, Xiaojing Yang, Tao Pan, Alfonso Mondragón. Nature 2003
173
7

Crystal structure of a hepatitis delta virus ribozyme.
A R Ferré-D'Amaré, K Zhou, J A Doudna. Nature 1998
592
7

Accurate SHAPE-directed RNA structure determination.
Katherine E Deigan, Tian W Li, David H Mathews, Kevin M Weeks. Proc Natl Acad Sci U S A 2009
452
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.