A citation-based method for searching scientific literature

A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
Times Cited: 1839







List of co-cited articles
771 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
32


An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
695
21

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
18

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
618
16

Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins.
Takeharu Nagai, Shuichi Yamada, Takashi Tominaga, Michinori Ichikawa, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2004
683
16

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
309
16

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
520
13

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
671
13

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
363
13

The green fluorescent protein.
R Y Tsien. Annu Rev Biochem 1998
13

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
128
13

The versatility and universality of calcium signalling.
M J Berridge, P Lipp, M D Bootman. Nat Rev Mol Cell Biol 2000
12


Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
201
11


Calcium signaling.
David E Clapham. Cell 2007
10



Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
191
10

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
51
19

Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano.
Kazuki Horikawa, Yoshiyuki Yamada, Tomoki Matsuda, Kentarou Kobayashi, Mitsuhiro Hashimoto, Toru Matsu-ura, Atsushi Miyawaki, Takayuki Michikawa, Katsuhiko Mikoshiba, Takeharu Nagai. Nat Methods 2010
221
9

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
157
9

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
153
9

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
292
9


Calcium signalling: dynamics, homeostasis and remodelling.
Michael J Berridge, Martin D Bootman, H Llewelyn Roderick. Nat Rev Mol Cell Biol 2003
8

A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies.
Miao Jing, Peng Zhang, Guangfu Wang, Jiesi Feng, Lukas Mesik, Jianzhi Zeng, Huoqing Jiang, Shaohua Wang, Jess C Looby, Nick A Guagliardo,[...]. Nat Biotechnol 2018
90
8

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
8

Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering.
J Zhang, Y Ma, S S Taylor, R Y Tsien. Proc Natl Acad Sci U S A 2001
389
8

FRET-based in vivo Ca2+ imaging by a new calmodulin-GFP fusion molecule.
K Truong, A Sawano, H Mizuno, H Hama, K I Tong, T K Mal, A Miyawaki, M Ikura. Nat Struct Biol 2001
138
8

A guide to choosing fluorescent proteins.
Nathan C Shaner, Paul A Steinbach, Roger Y Tsien. Nat Methods 2005
8

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
36
22


Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
90
8

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
73
10

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.
Erik A Rodriguez, Robert E Campbell, John Y Lin, Michael Z Lin, Atsushi Miyawaki, Amy E Palmer, Xiaokun Shu, Jin Zhang, Roger Y Tsien. Trends Biochem Sci 2017
214
8

A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change.
Marco Mank, Dierk F Reiff, Nicola Heim, Michael W Friedrich, Alexander Borst, Oliver Griesbeck. Biophys J 2006
190
7

Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications.
O Griesbeck, G S Baird, R E Campbell, D A Zacharias, R Y Tsien. J Biol Chem 2001
694
7

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
235
7

Crystal structure of the Aequorea victoria green fluorescent protein.
M Ormö, A B Cubitt, K Kallio, L A Gross, R Y Tsien, S J Remington. Science 1996
7



Structural basis for calcium sensing by GCaMP2.
Qi Wang, Bo Shui, Michael I Kotlikoff, Holger Sondermann. Structure 2008
107
7

Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.
Sohum Mehta, Yong Zhang, Richard H Roth, Jin-Fan Zhang, Albert Mo, Brian Tenner, Richard L Huganir, Jin Zhang. Nat Cell Biol 2018
34
20

Photobleaching-corrected FRET efficiency imaging of live cells.
Tomasz Zal, Nicholas R J Gascoigne. Biophys J 2004
234
6

Quantitative fluorescence resonance energy transfer measurements using fluorescence microscopy.
G W Gordon, G Berry, X H Liang, B Levine, B Herman. Biophys J 1998
557
6

High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor.
François St-Pierre, Jesse D Marshall, Ying Yang, Yiyang Gong, Mark J Schnitzer, Michael Z Lin. Nat Neurosci 2014
233
6

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor.
Yiyang Gong, Cheng Huang, Jin Zhong Li, Benjamin F Grewe, Yanping Zhang, Stephan Eismann, Mark J Schnitzer. Science 2015
199
6

A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.
Takeharu Nagai, Keiji Ibata, Eun Sun Park, Mie Kubota, Katsuhiko Mikoshiba, Atsushi Miyawaki. Nat Biotechnol 2002
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.