A citation-based method for searching scientific literature

S Tyagi, F R Kramer. Nat Biotechnol 1996
Times Cited: 2743







List of co-cited articles
835 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA mimics of green fluorescent protein.
Jeremy S Paige, Karen Y Wu, Samie R Jaffrey. Science 2011
744
11

Localization of ASH1 mRNA particles in living yeast.
E Bertrand, P Chartrand, M Schaefer, S M Shenoy, R H Singer, R M Long. Mol Cell 1998
11


Loop-mediated isothermal amplification of DNA.
T Notomi, H Okayama, H Masubuchi, T Yonekawa, K Watanabe, N Amino, T Hase. Nucleic Acids Res 2000
10

Isothermal Amplification of Nucleic Acids.
Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan. Chem Rev 2015
727
10

RNA mango aptamer-fluorophore: a bright, high-affinity complex for RNA labeling and tracking.
Elena V Dolgosheina, Sunny C Y Jeng, Shanker Shyam S Panchapakesan, Razvan Cojocaru, Patrick S K Chen, Peter D Wilson, Nancy Hawkins, Paul A Wiggins, Peter J Unrau. ACS Chem Biol 2014
226
9



Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
9

Rationally designed molecular beacons for bioanalytical and biomedical applications.
Jing Zheng, Ronghua Yang, Muling Shi, Cuichen Wu, Xiaohong Fang, Yinhui Li, Jishan Li, Weihong Tan. Chem Soc Rev 2015
199
9

Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems.
Liang-Zhong Yang, Yang Wang, Si-Qi Li, Run-Wen Yao, Peng-Fei Luan, Huang Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2019
123
9

Thermodynamic basis of the enhanced specificity of structured DNA probes.
G Bonnet, S Tyagi, A Libchaber, F R Kramer. Proc Natl Acad Sci U S A 1999
476
8

Triggered amplification by hybridization chain reaction.
Robert M Dirks, Niles A Pierce. Proc Natl Acad Sci U S A 2004
992
8

Visualization of single RNA transcripts in situ.
A M Femino, F S Fay, K Fogarty, R H Singer. Science 1998
871
8


Programmable RNA Tracking in Live Cells with CRISPR/Cas9.
David A Nelles, Mark Y Fang, Mitchell R O'Connell, Jia L Xu, Sebastian J Markmiller, Jennifer A Doudna, Gene W Yeo. Cell 2016
330
8


RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
895
7

Translation dynamics of single mRNAs in live cells and neurons.
Bin Wu, Carolina Eliscovich, Young J Yoon, Robert H Singer. Science 2016
267
7

Multicolor molecular beacons for allele discrimination.
S Tyagi, D P Bratu, F R Kramer. Nat Biotechnol 1998
897
7

An improved MS2 system for accurate reporting of the mRNA life cycle.
Evelina Tutucci, Maria Vera, Jeetayu Biswas, Jennifer Garcia, Roy Parker, Robert H Singer. Nat Methods 2018
145
6

A protein-tagging system for signal amplification in gene expression and fluorescence imaging.
Marvin E Tanenbaum, Luke A Gilbert, Lei S Qi, Jonathan S Weissman, Ronald D Vale. Cell 2014
806
6

Visualizing the distribution and transport of mRNAs in living cells.
Diana P Bratu, Byeong-Jik Cha, Musa M Mhlanga, Fred Russell Kramer, Sanjay Tyagi. Proc Natl Acad Sci U S A 2003
309
6

Hybridization kinetics and thermodynamics of molecular beacons.
Andrew Tsourkas, Mark A Behlke, Scott D Rose, Gang Bao. Nucleic Acids Res 2003
210
6

Molecular engineering of DNA: molecular beacons.
Kemin Wang, Zhiwen Tang, Chaoyong James Yang, Youngmi Kim, Xiaohong Fang, Wei Li, Yanrong Wu, Colin D Medley, Zehui Cao, Jun Li,[...]. Angew Chem Int Ed Engl 2009
411
6

Real-time observation of transcription initiation and elongation on an endogenous yeast gene.
Daniel R Larson, Daniel Zenklusen, Bin Wu, Jeffrey A Chao, Robert H Singer. Science 2011
406
6

Wavelength-shifting molecular beacons.
S Tyagi, S A Marras, F R Kramer. Nat Biotechnol 2000
225
6

Molecular beacon-enabled purification of living cells by targeting cell type-specific mRNAs.
Brian M Wile, Kiwon Ban, Young-Sup Yoon, Gang Bao. Nat Protoc 2014
33
15

In the right place at the right time: visualizing and understanding mRNA localization.
Adina R Buxbaum, Gal Haimovich, Robert H Singer. Nat Rev Mol Cell Biol 2015
333
5

Brightness enhanced DNA FIT-probes for wash-free RNA imaging in tissue.
Felix Hövelmann, Imre Gaspar, Anne Ephrussi, Oliver Seitz. J Am Chem Soc 2013
83
6

LNA-enhanced DNA FIT-probes for multicolour RNA imaging.
F Hövelmann, I Gaspar, J Chamiolo, M Kasper, J Steffen, A Ephrussi, O Seitz. Chem Sci 2016
44
11

Single mRNA molecules demonstrate probabilistic movement in living mammalian cells.
Dahlene Fusco, Nathalie Accornero, Brigitte Lavoie, Shailesh M Shenoy, Jean-Marie Blanchard, Robert H Singer, Edouard Bertrand. Curr Biol 2003
433
5

Real-Time Imaging of Translation on Single mRNA Transcripts in Live Cells.
Chong Wang, Boran Han, Ruobo Zhou, Xiaowei Zhuang. Cell 2016
198
5

Nucleic acid junctions and lattices.
N C Seeman. J Theor Biol 1982
5

Programming biomolecular self-assembly pathways.
Peng Yin, Harry M T Choi, Colby R Calvert, Niles A Pierce. Nature 2008
860
5

Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells.
Esther Braselmann, Colin Rathbun, Erin M Richards, Amy E Palmer. Cell Chem Biol 2020
25
20

Activatable aptamer probe for contrast-enhanced in vivo cancer imaging based on cell membrane protein-triggered conformation alteration.
Hui Shi, Xiaoxiao He, Kemin Wang, Xu Wu, Xiaosheng Ye, Qiuping Guo, Weihong Tan, Zhihe Qing, Xiaohai Yang, Bing Zhou. Proc Natl Acad Sci U S A 2011
204
5

Real-time quantification of single RNA translation dynamics in living cells.
Tatsuya Morisaki, Kenneth Lyon, Keith F DeLuca, Jennifer G DeLuca, Brian P English, Zhengjian Zhang, Luke D Lavis, Jonathan B Grimm, Sarada Viswanathan, Loren L Looger,[...]. Science 2016
211
5

Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs.
Xianjun Chen, Dasheng Zhang, Ni Su, Bingkun Bao, Xin Xie, Fangting Zuo, Lipeng Yang, Hui Wang, Li Jiang, Qiuning Lin,[...]. Nat Biotechnol 2019
90
5

A DNA-fuelled molecular machine made of DNA.
B Yurke, A J Turberfield, A P Mills, F C Simmel, J L Neumann. Nature 2000
5

Dual FRET molecular beacons for mRNA detection in living cells.
Philip J Santangelo, Brent Nix, Andrew Tsourkas, Gang Bao. Nucleic Acids Res 2004
272
5


Molecular beacons.
Weihong Tan, Kemim Wang, Timothy J Drake. Curr Opin Chem Biol 2004
337
5

Nano-flares: probes for transfection and mRNA detection in living cells.
Dwight S Seferos, David A Giljohann, Haley D Hill, Andrew E Prigodich, Chad A Mirkin. J Am Chem Soc 2007
455
5

Control of DNA strand displacement kinetics using toehold exchange.
David Yu Zhang, Erik Winfree. J Am Chem Soc 2009
716
5

NUPACK: Analysis and design of nucleic acid systems.
Joseph N Zadeh, Conrad D Steenberg, Justin S Bois, Brian R Wolfe, Marshall B Pierce, Asif R Khan, Robert M Dirks, Niles A Pierce. J Comput Chem 2011
766
5

RNA targeting with CRISPR-Cas13.
Omar O Abudayyeh, Jonathan S Gootenberg, Patrick Essletzbichler, Shuo Han, Julia Joung, Joseph J Belanto, Vanessa Verdine, David B T Cox, Max J Kellner, Aviv Regev,[...]. Nature 2017
850
5

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
5

Recent advances in high-performance fluorescent and bioluminescent RNA imaging probes.
Yuqiong Xia, Ruili Zhang, Zhongliang Wang, Jie Tian, Xiaoyuan Chen. Chem Soc Rev 2017
73
6

Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells.
Antony K Chen, Mark A Behlke, Andrew Tsourkas. Nucleic Acids Res 2007
93
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.