A citation-based method for searching scientific literature

J W Brown. Nucleic Acids Res 1999
Times Cited: 238







List of co-cited articles
873 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
23

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M D'Souza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Müller,[...]. BMC Bioinformatics 2002
21


Ribonuclease P: the evolution of an ancient RNA enzyme.
Scott C Walker, David R Engelke. Crit Rev Biochem Mol Biol 2006
139
19

Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007
126
19

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.
David H Mathews, Matthew D Disney, Jessica L Childs, Susan J Schroeder, Michael Zuker, Douglas H Turner. Proc Natl Acad Sci U S A 2004
933
18

RNase P: interface of the RNA and protein worlds.
Donald Evans, Steven M Marquez, Norman R Pace. Trends Biochem Sci 2006
151
18

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.
J K Harris, E S Haas, D Williams, D N Frank, J W Brown. RNA 2001
79
22

Functional reconstitution and characterization of Pyrococcus furiosus RNase P.
Hsin-Yue Tsai, Dileep K Pulukkunat, Walter K Woznick, Venkat Gopalan. Proc Natl Acad Sci U S A 2006
71
25

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999
179
18

Vienna RNA secondary structure server.
Ivo L Hofacker. Nucleic Acids Res 2003
17

Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005
158
17

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
380
17

CONTRAfold: RNA secondary structure prediction without physics-based models.
Chuong B Do, Daniel A Woods, Serafim Batzoglou. Bioinformatics 2006
265
16

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005
156
16

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
T Xia, J SantaLucia, M E Burkard, R Kierzek, S J Schroeder, X Jiao, C Cox, D H Turner. Biochemistry 1998
809
16

RNA STRAND: the RNA secondary structure and statistical analysis database.
Mirela Andronescu, Vera Bereg, Holger H Hoos, Anne Condon. BMC Bioinformatics 2008
148
16



The tmRDB and SRPDB resources.
Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb. Nucleic Acids Res 2006
86
17

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nicholas J Reiter, Amy Osterman, Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Nature 2010
193
15






Rfam: annotating non-coding RNAs in complete genomes.
Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R Eddy, Alex Bateman. Nucleic Acids Res 2005
925
13

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.
Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen. PLoS Comput Biol 2007
303
13


The enigma of ribonuclease P evolution.
Enno Hartmann, Roland K Hartmann. Trends Genet 2003
104
13


RNAstructure: software for RNA secondary structure prediction and analysis.
Jessica S Reuter, David H Mathews. BMC Bioinformatics 2010
980
13


Evolutionary variation in bacterial RNase P RNAs.
E S Haas, J W Brown. Nucleic Acids Res 1998
80
15




Crystal structure of the specificity domain of ribonuclease P.
Andrey S Krasilnikov, Xiaojing Yang, Tao Pan, Alfonso Mondragón. Nature 2003
173
12

Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects.
Lien B Lai, Agustín Vioque, Leif A Kirsebom, Venkat Gopalan. FEBS Lett 2010
99
12


A statistical sampling algorithm for RNA secondary structure prediction.
Ye Ding, Charles E Lawrence. Nucleic Acids Res 2003
325
11

Rfam: an RNA family database.
Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R Eddy. Nucleic Acids Res 2003
903
11

Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign.
Arif Ozgun Harmanci, Gaurav Sharma, David H Mathews. BMC Bioinformatics 2007
73
15

Efficient parameter estimation for RNA secondary structure prediction.
Mirela Andronescu, Anne Condon, Holger H Hoos, David H Mathews, Kevin P Murphy. Bioinformatics 2007
99
11


Evidence for induced fit in bacterial RNase P RNA-mediated cleavage.
Mathias Brännvall, Ema Kikovska, Shiying Wu, Leif A Kirsebom. J Mol Biol 2007
30
36





Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.