A citation-based method for searching scientific literature

Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
Times Cited: 1404



Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu, Mark T Gregory, Joe Shuga, Luz Montesclaros, Jason G Underwood, Donald A Masquelier, Stefanie Y Nishimura, Michael Schnall-Levin, Paul W Wyatt, Christopher M Hindson, Rajiv Bharadwaj, Alexander Wong, Kevin D Ness, Lan W Beppu, H Joachim Deeg, Christopher McFarland, Keith R Loeb, William J Valente, Nolan G Ericson, Emily A Stevens, Jerald P Radich, Tarjei S Mikkelsen, Benjamin J Hindson, Jason H Bielas. Nat Commun 2017
Times Cited: 1573




List of shared articles



Times cited

High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning.
Xiangtao Li, Shaochuan Li, Lei Huang, Shixiong Zhang, Ka-Chun Wong. Brief Bioinform 2022
0

scAPAatlas: an atlas of alternative polyadenylation across cell types in human and mouse.
Xiaoxiao Yang, Yang Tong, Gerui Liu, Jiapei Yuan, Yang Yang. Nucleic Acids Res 2022
0


Crafting a blueprint for single-cell RNA sequencing.
Tom Denyer, Marja C P Timmermans. Trends Plant Sci 2022
1

Deep learning-based advances and applications for single-cell RNA-sequencing data analysis.
Siqi Bao, Ke Li, Congcong Yan, Zicheng Zhang, Jia Qu, Meng Zhou. Brief Bioinform 2022
0

ScCAEs: deep clustering of single-cell RNA-seq via convolutional autoencoder embedding and soft K-means.
Hang Hu, Zhong Li, Xiangjie Li, Minzhe Yu, Xiutao Pan. Brief Bioinform 2022
0

Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs.
Kitra Cates, Matthew J McCoy, Ji-Sun Kwon, Yangjian Liu, Daniel G Abernathy, Bo Zhang, Shaopeng Liu, Paul Gontarz, Woo Kyung Kim, Shawei Chen,[...]. Cell Stem Cell 2021
8


Single-cell profiling reveals the trajectories of natural killer cell differentiation in bone marrow and a stress signature induced by acute myeloid leukemia.
Adeline Crinier, Pierre-Yves Dumas, Bertrand Escalière, Christelle Piperoglou, Laurine Gil, Arnaud Villacreces, Frédéric Vély, Zoran Ivanovic, Pierre Milpied, Émilie Narni-Mancinelli,[...]. Cell Mol Immunol 2021
12

FEATS: feature selection-based clustering of single-cell RNA-seq data.
Edwin Vans, Ashwini Patil, Alok Sharma. Brief Bioinform 2021
4

Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids.
Jeremy J Velazquez, Ryan LeGraw, Farzaneh Moghadam, Yuqi Tan, Jacquelyn Kilbourne, Joseph C Maggiore, Joshua Hislop, Silvia Liu, Davy Cats, Susana M Chuva de Sousa Lopes,[...]. Cell Syst 2021
13

Identification and Characterization of Zebrafish Tlr4 Coreceptor Md-2.
Andrea N Loes, Melissa N Hinman, Dylan R Farnsworth, Adam C Miller, Karen Guillemin, Michael J Harms. J Immunol 2021
4

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
3

Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.
Xitiz Chamling, Alyssa Kallman, Weixiang Fang, Cynthia A Berlinicke, Joseph L Mertz, Prajwal Devkota, Itzy E Morales Pantoja, Matthew D Smith, Zhicheng Ji, Calvin Chang,[...]. Nat Commun 2021
6


Targeting barrel field spiny stellate cells using a vesicular monoaminergic transporter 2-Cre mouse line.
Fabio B Freitag, Aikeremu Ahemaiti, Hannah M Weman, Katharina Ambroz, Malin C Lagerström. Sci Rep 2021
0

An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution.
Aubrey Ga Howard, Phillip A Baker, Rodrigo Ibarra-García-Padilla, Joshua A Moore, Lucia J Rivas, James J Tallman, Eileen W Singleton, Jessa L Westheimer, Julia A Corteguera, Rosa A Uribe. Elife 2021
8

Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq.
Joachim Luginbühl, Tsukasa Kouno, Rei Nakano, Thomas E Chater, Divya M Sivaraman, Mami Kishima, Filip Roudnicky, Piero Carninci, Charles Plessy, Jay W Shin. Stem Cell Reports 2021
2

The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish.
John H Postlethwait, Michelle S Massaquoi, Dylan R Farnsworth, Yi-Lin Yan, Karen Guillemin, Adam C Miller. Biol Open 2021
2

Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies.
Wilton B Williams, R Ryan Meyerhoff, R J Edwards, Hui Li, Kartik Manne, Nathan I Nicely, Rory Henderson, Ye Zhou, Katarzyna Janowska, Katayoun Mansouri,[...]. Cell 2021
13

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.
Mingxuan Gao, Mingyi Ling, Xinwei Tang, Shun Wang, Xu Xiao, Ying Qiao, Wenxian Yang, Rongshan Yu. Brief Bioinform 2021
2

Boosting scRNA-seq data clustering by cluster-aware feature weighting.
Rui-Yi Li, Jihong Guan, Shuigeng Zhou. BMC Bioinformatics 2021
0

Loss of Gap Junction Delta-2 (GJD2) gene orthologs leads to refractive error in zebrafish.
Wim H Quint, Kirke C D Tadema, Erik de Vrieze, Rachel M Lukowicz, Sanne Broekman, Beerend H J Winkelman, Melanie Hoevenaars, H Martijn de Gruiter, Erwin van Wijk, Frank Schaeffel,[...]. Commun Biol 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Individual B cells transcribe multiple rearranged immunoglobulin light chains in teleost fish.
Pedro Perdiguero, Esther Morel, Patricia Díaz-Rosales, Carolina Tafalla. iScience 2021
0