A citation-based method for searching scientific literature

Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck, John J Trombetta, David A Weitz, Joshua R Sanes, Alex K Shalek, Aviv Regev, Steven A McCarroll. Cell 2015
Times Cited: 2582



Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Times Cited: 2430




List of shared articles



Times cited

Fixed single-cell RNA sequencing for understanding virus infection and host response.
Hoang Van Phan, Michiel van Gent, Nir Drayman, Anindita Basu, Michaela U Gack, Savaş Tay. bioRxiv 2021
0

Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.
Tian Lan, Gyorgy Hutvagner, Qing Lan, Tao Liu, Jinyan Li. Brief Bioinform 2021
1

FEATS: feature selection-based clustering of single-cell RNA-seq data.
Edwin Vans, Ashwini Patil, Alok Sharma. Brief Bioinform 2021
1

CREBBP/EP300 mutations promoted tumor progression in diffuse large B-cell lymphoma through altering tumor-associated macrophage polarization via FBXW7-NOTCH-CCL2/CSF1 axis.
Yao-Hui Huang, Kun Cai, Peng-Peng Xu, Li Wang, Chuan-Xin Huang, Ying Fang, Shu Cheng, Xiao-Jian Sun, Feng Liu, Jin-Yan Huang,[...]. Signal Transduct Target Ther 2021
2

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
3

Persistence of mature dendritic cells, TH2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade.
Christine Bangert, Katharina Rindler, Thomas Krausgruber, Natalia Alkon, Felix M Thaler, Harald Kurz, Tanya Ayub, Denis Demirtas, Nikolaus Fortelny, Vera Vorstandlechner,[...]. Sci Immunol 2021
4

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
3

Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-seq data.
Krishan Gupta, Manan Lalit, Aditya Biswas, Chad D Sanada, Cassandra Greene, Kyle Hukari, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Naveen Ramalingam, Gaurav Ahuja,[...]. Genome Res 2021
0

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, Antonio Grimaldi, Valentina Bouché, Gennaro Gambardella, Davide Cacchiarelli. Methods Mol Biol 2021
0

Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype.
Fátima Valdés-Mora, Robert Salomon, Brian Stewart Gloss, Andrew Man Kit Law, Jeron Venhuizen, Lesley Castillo, Kendelle Joan Murphy, Astrid Magenau, Michael Papanicolaou, Laura Rodriguez de la Fuente,[...]. Cell Rep 2021
0

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma.
Ailu Chen, Maria P Diaz-Soto, Miguel F Sanmamed, Taylor Adams, Jonas C Schupp, Amolika Gupta, Clemente Britto, Maor Sauler, Xiting Yan, Qing Liu,[...]. Respir Res 2021
0

Gene Expression Analysis of T-Cells by Single-Cell RNA-Seq.
Domenico Lo Tartaro, Sara De Biasi, Mattia Forcato, Lara Gibellini, Andrea Cossarizza. Methods Mol Biol 2021
0

Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition.
Gianni Carraro, Justin Langerman, Shan Sabri, Zareeb Lorenzana, Arunima Purkayastha, Guangzhu Zhang, Bindu Konda, Cody J Aros, Ben A Calvert, Aleks Szymaniak,[...]. Nat Med 2021
2

Single-cell technologies and analyses in hematopoiesis and hematological malignancies.
Ignacio Campillo-Marcos, Damiana Alvarez-Errico, Regina A Alandes, Elisabetta Mereu, Manel Esteller. Exp Hematol 2021
1

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Detection of differentially abundant cell subpopulations in scRNA-seq data.
Jun Zhao, Ariel Jaffe, Henry Li, Ofir Lindenbaum, Esen Sefik, Ruaidhrí Jackson, Xiuyuan Cheng, Richard A Flavell, Yuval Kluger. Proc Natl Acad Sci U S A 2021
0

Cryptic developmental events determine medulloblastoma radiosensitivity and cellular heterogeneity without altering transcriptomic profile.
Daniel Shiloh Malawsky, Seth J Weir, Jennifer Karin Ocasio, Benjamin Babcock, Taylor Dismuke, Abigail H Cleveland, Andrew M Donson, Rajeev Vibhakar, Kirk Wilhelmsen, Timothy R Gershon. Commun Biol 2021
1


A Subpopulation of Schwann Cell-Like Cells With Nerve Regeneration Signatures Is Identified Through Single-Cell RNA Sequencing.
Zairong Wei, Shenyou Shu, Mingjun Zhang, Sitian Xie, Shijie Tang, Kaiyu Nie, Haihong Li. Front Physiol 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Single-cell RNA sequencing reveals the mechanism of sonodynamic therapy combined with a RAS inhibitor in the setting of hepatocellular carcinoma.
Bolin Wu, Yanchi Yuan, Jiayin Liu, Haitao Shang, Jing Dong, Xitian Liang, Dongxu Wang, Yichi Chen, Chunyue Wang, Yang Zhou,[...]. J Nanobiotechnology 2021
0

Surfactant protein C mutation links postnatal type 2 cell dysfunction to adult disease.
Sneha Sitaraman, Emily P Martin, Cheng-Lun Na, Shuyang Zhao, Jenna Green, Hitesh Deshmukh, Anne-Karina T Perl, James P Bridges, Yan Xu, Timothy E Weaver. JCI Insight 2021
1

Normalization by distributional resampling of high throughput single-cell RNA-sequencing data.
Jared Brown, Zijian Ni, Chitrasen Mohanty, Rhonda Bacher, Christina Kendziorski. Bioinformatics 2021
0


Exploiting Single-Cell Tools in Gene and Cell Therapy.
Daniel Bode, Alyssa H Cull, Juan A Rubio-Lara, David G Kent. Front Immunol 2021
0

Single-Cell Transcriptome Profiling Simulation Reveals the Impact of Sequencing Parameters and Algorithms on Clustering.
Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu. Life (Basel) 2021
0

Molecular characteristics and spatial distribution of adult human corneal cell subtypes.
Ann J Ligocki, Wen Fury, Christian Gutierrez, Christina Adler, Tao Yang, Min Ni, Yu Bai, Yi Wei, Guillermo L Lehmann, Carmelo Romano. Sci Rep 2021
0

Diversity of Reactive Astrogliosis in CNS Pathology: Heterogeneity or Plasticity?
Aaron J Moulson, Jordan W Squair, Robin J M Franklin, Wolfram Tetzlaff, Peggy Assinck. Front Cell Neurosci 2021
0

COTAN: scRNA-seq data analysis based on gene co-expression.
Silvia Giulia Galfrè, Francesco Morandin, Marco Pietrosanto, Federico Cremisi, Manuela Helmer-Citterich. NAR Genom Bioinform 2021
0