A citation-based method for searching scientific literature

Takashi Nagano, Yaniv Lubling, Tim J Stevens, Stefan Schoenfelder, Eitan Yaffe, Wendy Dean, Ernest D Laue, Amos Tanay, Peter Fraser. Nature 2013
Times Cited: 831



Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
Times Cited: 795




List of shared articles



Times cited

The two waves in single-cell 3D genomics.
Sergey V Ulianov, Sergey V Razin. Semin Cell Dev Biol 2022
3

Polymer Folding Simulations from Hi-C Data.
Yinxiu Zhan, Luca Giorgetti, Guido Tiana. Methods Mol Biol 2022
0


scHiCStackL: a stacking ensemble learning-based method for single-cell Hi-C classification using cell embedding.
Hao Wu, Yingfu Wu, Yuhong Jiang, Bing Zhou, Haoru Zhou, Zhongli Chen, Yi Xiong, Quanzhong Liu, Hongming Zhang. Brief Bioinform 2022
0

A Mediator-cohesin axis controls heterochromatin domain formation.
Judith H I Haarhuis, Robin H van der Weide, Vincent A Blomen, Koen D Flach, Hans Teunissen, Laureen Willems, Thijn R Brummelkamp, Benjamin D Rowland, Elzo de Wit. Nat Commun 2022
0

Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling.
Barbara Scalvini, Helmut Schiessel, Anatoly Golovnev, Alireza Mashaghi. iScience 2022
0

Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion.
Sumitabha Brahmachari, Vinícius G Contessoto, Michele Di Pierro, José N Onuchic. Nucleic Acids Res 2022
0

Reconstruct high-resolution 3D genome structures for diverse cell-types using FLAMINGO.
Hao Wang, Jiaxin Yang, Yu Zhang, Jianliang Qian, Jianrong Wang. Nat Commun 2022
0

The Physics of DNA Folding: Polymer Models and Phase-Separation.
Andrea Esposito, Alex Abraham, Mattia Conte, Francesca Vercellone, Antonella Prisco, Simona Bianco, Andrea M Chiariello. Polymers (Basel) 2022
0

Physical mechanisms of chromatin spatial organization.
Andrea M Chiariello, Simona Bianco, Andrea Esposito, Luca Fiorillo, Mattia Conte, Ehsan Irani, Francesco Musella, Alex Abraham, Antonella Prisco, Mario Nicodemi. FEBS J 2022
4

Predictive Polymer Models for 3D Chromosome Organization.
Michael Chiang, Giada Forte, Nick Gilbert, Davide Marenduzzo, Chris A Brackley. Methods Mol Biol 2022
1

Olfactory receptor choice: a case study for gene regulation in a multi-enhancer system.
Ariel Pourmorady, Stavros Lomvardas. Curr Opin Genet Dev 2022
3

Integrative approaches in genome structure analysis.
Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Frank Alber. Structure 2022
0

The macro and micro of chromosome conformation capture.
Viraat Y Goel, Anders S Hansen. Wiley Interdiscip Rev Dev Biol 2021
9

Novel orthogonal methods to uncover the complexity and diversity of nuclear architecture.
Sjoerd Jd Tjalsma, Wouter de Laat. Curr Opin Genet Dev 2021
2

The relationship between genome structure and function.
A Marieke Oudelaar, Douglas R Higgs. Nat Rev Genet 2021
16

Three-dimensional chromatin organization in cardiac development and disease.
Alessandro Bertero, Manuel Rosa-Garrido. J Mol Cell Cardiol 2021
6

Genome-in-a-Box: Building a Chromosome from the Bottom Up.
Anthony Birnie, Cees Dekker. ACS Nano 2021
4

Order and stochasticity in the folding of individual Drosophila genomes.
Sergey V Ulianov, Vlada V Zakharova, Aleksandra A Galitsyna, Pavel I Kos, Kirill E Polovnikov, Ilya M Flyamer, Elena A Mikhaleva, Ekaterina E Khrameeva, Diego Germini, Mariya D Logacheva,[...]. Nat Commun 2021
14

Plant 3D genomics: the exploration and application of chromatin organization.
Liuling Pei, Guoliang Li, Keith Lindsey, Xianlong Zhang, Maojun Wang. New Phytol 2021
4

Three-dimensional chromatin ensemble reconstruction via stochastic embedding.
Enrico Guarnera, Zhen Wah Tan, Igor N Berezovsky. Structure 2021
2

The three-dimensional genome in zebrafish development.
Anastasia Labudina, Julia A Horsfield. Brief Funct Genomics 2021
0

Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.
Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea M Chiariello, Simona Bianco, Alexander Kukalev, Ibai Irastorza-Azcarate, Andrea Esposito, Alex Abraham,[...]. Nat Methods 2021
10

Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures.
Xian Hao, Jyotsana J Parmar, Benoît Lelandais, Andrey Aristov, Wei Ouyang, Christian Weber, Christophe Zimmer. Genome Biol 2021
2