A citation-based method for searching scientific literature

Andrew E Jaffe, Rafael A Irizarry. Genome Biol 2014
Times Cited: 547



Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
Times Cited: 1565




List of shared articles



Times cited

Alcohol consumption is associated with widespread changes in blood DNA methylation: Analysis of cross-sectional and longitudinal data.
Pierre-Antoine Dugué, Rory Wilson, Benjamin Lehne, Harindra Jayasekara, Xiaochuan Wang, Chol-Hee Jung, JiHoon E Joo, Enes Makalic, Daniel F Schmidt, Laura Baglietto,[...]. Addict Biol 2021
13


Testing cell-type-specific mediation effects in genome-wide epigenetic studies.
Xiangyu Luo, Joel Schwartz, Andrea Baccarelli, Zhonghua Liu. Brief Bioinform 2021
3


Sex-specific associations of asthma acquisition with changes in DNA methylation during adolescence.
Rutu Patel, Farnaz Solatikia, Hongmei Zhang, Alemayehu Wolde, Latha Kadalayil, Wilfried Karmaus, Susan Ewart, Ryan Arathimos, Caroline Relton, Susan Ring,[...]. Clin Exp Allergy 2021
2

Methylation marks of prenatal exposure to maternal smoking and risk of cancer in adulthood.
Pierre-Antoine Dugué, Allison M Hodge, Ee Ming Wong, JiHoon E Joo, Chol-Hee Jung, John L Hopper, Dallas R English, Graham G Giles, Roger L Milne, Melissa C Southey. Int J Epidemiol 2021
1

Estimating cell-type-specific DNA methylation effects in heterogeneous cellular populations.
Yen-Chen A Feng, Yichen Guo, Lucile Pain, G Mark Lathrop, Catherine Laprise, Miriam F Moffatt, William Ocm Cookson, Liming Liang. Epigenomics 2021
1

Childhood DNA methylation as a marker of early life rapid weight gain and subsequent overweight.
N Robinson, H Brown, Elie Antoun, Keith M Godfrey, Mark A Hanson, Karen A Lillycrop, Sarah R Crozier, Robert Murray, M S Pearce, C L Relton,[...]. Clin Epigenetics 2021
2

Epigenome-wide change and variation in DNA methylation in childhood: trajectories from birth to late adolescence.
Rosa H Mulder, Alexander Neumann, Charlotte A M Cecil, Esther Walton, Lotte C Houtepen, Andrew J Simpkin, Jolien Rijlaarsdam, Bastiaan T Heijmans, Tom R Gaunt, Janine F Felix,[...]. Hum Mol Genet 2021
5

Genome-wide identification of cis DNA methylation quantitative trait loci in three Southeast Asian Populations.
Irfahan Kassam, Sili Tan, Fei Fei Gan, Woei-Yuh Saw, Linda Wei-Lin Tan, Don Kyin Nwe Moong, Richie Soong, Yik-Ying Teo, Marie Loh. Hum Mol Genet 2021
1

Clinical epigenomics for cardiovascular disease: Diagnostics and therapies.
Matthew A Fischer, Thomas M Vondriska. J Mol Cell Cardiol 2021
0


Saliva cell type DNA methylation reference panel for epidemiological studies in children.
Lauren Y M Middleton, John Dou, Jonah Fisher, Jonathan A Heiss, Vy K Nguyen, Allan C Just, Jessica Faul, Erin B Ware, Colter Mitchell, Justin A Colacino,[...]. Epigenetics 2021
1

A systematic review of childhood maltreatment and DNA methylation: candidate gene and epigenome-wide approaches.
Stephanie H Parade, Lindsay Huffhines, Teresa E Daniels, Laura R Stroud, Nicole R Nugent, Audrey R Tyrka. Transl Psychiatry 2021
4

Detecting differentially methylated regions with multiple distinct associations.
Samantha Lent, Andres Cardenas, Sheryl L Rifas-Shiman, Patrice Perron, Luigi Bouchard, Ching-Ti Liu, Marie-France Hivert, Josée Dupuis. Epigenomics 2021
2

EMeth: An EM algorithm for cell type decomposition based on DNA methylation data.
Hanyu Zhang, Ruoyi Cai, James Dai, Wei Sun. Sci Rep 2021
1

Pre-adolescence DNA methylation is associated with BMI status change from pre- to post-adolescence.
Jiajing Wang, Hongmei Zhang, Faisal I Rezwan, Caroline Relton, S Hasan Arshad, John W Holloway. Clin Epigenetics 2021
0

Meta-analysis of genome-wide DNA methylation identifies shared associations across neurodegenerative disorders.
Marta F Nabais, Simon M Laws, Tian Lin, Costanza L Vallerga, Nicola J Armstrong, Ian P Blair, John B Kwok, Karen A Mather, George D Mellick, Perminder S Sachdev,[...]. Genome Biol 2021
2

Epigenetic age acceleration changes 2 years after antiretroviral therapy initiation in adults with HIV: a substudy of the NEAT001/ANRS143 randomised trial.
Andrés Esteban-Cantos, Javier Rodríguez-Centeno, Pilar Barruz, Belén Alejos, Gabriel Saiz-Medrano, Julián Nevado, Artur Martin, Francisco Gayá, Rosa De Miguel, Jose I Bernardino,[...]. Lancet HIV 2021
5

VTRNA2-1: Genetic Variation, Heritable Methylation and Disease Association.
Pierre-Antoine Dugué, Chenglong Yu, Timothy McKay, Ee Ming Wong, Jihoon Eric Joo, Helen Tsimiklis, Fleur Hammet, Maryam Mahmoodi, Derrick Theys, kConFab,[...]. Int J Mol Sci 2021
2

Persistent variations of blood DNA methylation associated with treatment exposures and risk for cardiometabolic outcomes in long-term survivors of childhood cancer in the St. Jude Lifetime Cohort.
Nan Song, Chia-Wei Hsu, Haitao Pan, Yinan Zheng, Lifang Hou, Jin-Ah Sim, Zhenghong Li, Heather Mulder, John Easton, Emily Walker,[...]. Genome Med 2021
1

Prediction of biological age and evaluation of genome-wide dynamic methylomic changes throughout human aging.
Mahmoud Amiri Roudbar, Seyedeh Fatemeh Mousavi, Siavash Salek Ardestani, Fernando Brito Lopes, Mehdi Momen, Daniel Gianola, Hasan Khatib. G3 (Bethesda) 2021
0

Prenatal Lead (Pb) Exposure and Peripheral Blood DNA Methylation (5mC) and Hydroxymethylation (5hmC) in Mexican Adolescents from the ELEMENT Birth Cohort.
Christine A Rygiel, Jaclyn M Goodrich, Maritsa Solano-González, Adriana Mercado-García, Howard Hu, Martha M Téllez-Rojo, Karen E Peterson, Dana C Dolinoy. Environ Health Perspect 2021
0

DNA methylation-based sex classifier to predict sex and identify sex chromosome aneuploidy.
Yucheng Wang, Eilis Hannon, Olivia A Grant, Tyler J Gorrie-Stone, Meena Kumari, Jonathan Mill, Xiaojun Zhai, Klaus D McDonald-Maier, Leonard C Schalkwyk. BMC Genomics 2021
0

A multi-ethnic epigenome-wide association study of leukocyte DNA methylation and blood lipids.
Min-A Jhun, Michael Mendelson, Rory Wilson, Rahul Gondalia, Roby Joehanes, Elias Salfati, Xiaoping Zhao, Kim Valeska Emilie Braun, Anh Nguyet Do, Åsa K Hedman,[...]. Nat Commun 2021
0

DNA methylation analyses identify an intronic ZDHHC6 locus associated with time to recurrent stroke in the Vitamin Intervention for Stroke Prevention (VISP) clinical trial.
Nicole M Davis Armstrong, Wei-Min Chen, Fang-Chi Hsu, Michael S Brewer, Natalia Cullell, Israel Fernández-Cadenas, Stephen R Williams, Michèle M Sale, Bradford B Worrall, Keith L Keene. PLoS One 2021
0

BMI trajectory in childhood is associated with asthma incidence at young adulthood mediated by DNA methylation.
Rutu Rathod, Hongmei Zhang, Wilfried Karmaus, Susan Ewart, Latha Kadalayil, Caroline Relton, Susan Ring, S Hasan Arshad, John W Holloway. Allergy Asthma Clin Immunol 2021
0


DNA Methylation Alterations in Blood Cells of Toddlers with Down Syndrome.
Oxana Yu Naumova, Rebecca Lipschutz, Sergey Yu Rychkov, Olga V Zhukova, Elena L Grigorenko. Genes (Basel) 2021
0


Epigenetic Clocks Are Not Accelerated in COVID-19 Patients.
Julia Franzen, Selina Nüchtern, Vithurithra Tharmapalan, Margherita Vieri, Miloš Nikolić, Yang Han, Paul Balfanz, Nikolaus Marx, Michael Dreher, Tim H Brümmendorf,[...]. Int J Mol Sci 2021
0

Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGAR.
Michael Scherer, Gilles Gasparoni, Souad Rahmouni, Tatiana Shashkova, Marion Arnoux, Edouard Louis, Arina Nostaeva, Diana Avalos, Emmanouil T Dermitzakis, Yurii S Aulchenko,[...]. Epigenetics Chromatin 2021
0

Accelerated hematopoietic mitotic aging measured by DNA methylation, blood cell lineage, and Parkinson's disease.
Kimberly C Paul, Alexandra M Binder, Steve Horvath, Cynthia Kusters, Qi Yan, Irish Del Rosario, Yu Yu, Jeff Bronstein, Beate Ritz. BMC Genomics 2021
0

Association of Asthma and Rhinitis with Epigenetics of Coronavirus Related Genes.
Aniruddha Rathod, Rutu Rathod, Hongmei Zhang, Parnian Kheirkhah Rahimabad, Wilfried Karmaus, Hasan Arshad. Epigenet Insights 2021
0

Race/ethnicity-associated blood DNA methylation differences between Japanese and European American women: an exploratory study.
Min-Ae Song, Anna Eames Seffernick, Kellie J Archer, Kellie M Mori, Song-Yi Park, Linda Chang, Thomas Ernst, Maarit Tiirikainen, Karolina Peplowska, Lynne R Wilkens,[...]. Clin Epigenetics 2021
0

DNA Methylation and Type 2 Diabetes: Novel Biomarkers for Risk Assessment?
Gregory Alexander Raciti, Antonella Desiderio, Michele Longo, Alessia Leone, Federica Zatterale, Immacolata Prevenzano, Claudia Miele, Raffaele Napoli, Francesco Beguinot. Int J Mol Sci 2021
0

Convergent genomic and pharmacological evidence of PI3K/GSK3 signaling alterations in neurons from schizophrenia patients.
Laura Stertz, Jessica Di Re, Guangsheng Pei, Gabriel R Fries, Emily Mendez, Shenglan Li, Laura Smith-Callahan, Henriette Raventos, Jerricho Tipo, Rohan Cherukuru,[...]. Neuropsychopharmacology 2021
4

Prenatal stress and epigenetics.
L Cao-Lei, S R de Rooij, S King, S G Matthews, G A S Metz, T J Roseboom, M Szyf. Neurosci Biobehav Rev 2020
60

Can social support during pregnancy affect maternal DNA methylation? Findings from a cohort of African-Americans.
Pamela J Surkan, Xiumei Hong, Boyang Zhang, Nobutoshi Nawa, Hongkai Ji, Wan-Yee Tang, Yuelong Ji, Mary C Kimmel, Guoying Wang, Colleen Pearson,[...]. Pediatr Res 2020
2

Smoking and blood DNA methylation: an epigenome-wide association study and assessment of reversibility.
Pierre-Antoine Dugué, Chol-Hee Jung, Jihoon E Joo, Xiaochuan Wang, Ee Ming Wong, Enes Makalic, Daniel F Schmidt, Laura Baglietto, Gianluca Severi, Melissa C Southey,[...]. Epigenetics 2020
13

The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
Lisa M McEwen, Kieran J O'Donnell, Megan G McGill, Rachel D Edgar, Meaghan J Jones, Julia L MacIsaac, David Tse Shen Lin, Katia Ramadori, Alexander Morin, Nicole Gladish,[...]. Proc Natl Acad Sci U S A 2020
36

Epigenetic Age Acceleration and Cognitive Function in African American Adults in Midlife: The Atherosclerosis Risk in Communities Study.
Jan Bressler, Riccardo E Marioni, Rosie M Walker, Rui Xia, Rebecca F Gottesman, B Gwen Windham, Megan L Grove, Weihua Guan, James S Pankow, Kathryn L Evans,[...]. J Gerontol A Biol Sci Med Sci 2020
8

Differential DNA methylation in experienced meditators after an intensive day of mindfulness-based practice: Implications for immune-related pathways.
R Chaix, M Fagny, M Cosin-Tomás, M Alvarez-López, L Lemee, B Regnault, R J Davidson, A Lutz, P Kaliman. Brain Behav Immun 2020
11

Genome-wide characterization of cytosine-specific 5-hydroxymethylation in normal breast tissue.
Owen M Wilkins, Kevin C Johnson, E Andres Houseman, Jessica E King, Carmen J Marsit, Brock C Christensen. Epigenetics 2020
2

Leukocyte Traits and Exposure to Ambient Particulate Matter Air Pollution in the Women's Health Initiative and Atherosclerosis Risk in Communities Study.
Rahul Gondalia, Katelyn M Holliday, Antoine Baldassari, Anne E Justice, James D Stewart, Duanping Liao, Jeff D Yanosky, Stephanie M Engel, Kristina M Jordahl, Parveen Bhatti,[...]. Environ Health Perspect 2020
7

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.
Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer,[...]. BMC Bioinformatics 2020
9

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs.
Emily E Burke, Joshua G Chenoweth, Joo Heon Shin, Leonardo Collado-Torres, Suel-Kee Kim, Nicola Micali, Yanhong Wang, Carlo Colantuoni, Richard E Straub, Daniel J Hoeppner,[...]. Nat Commun 2020
30

Longitudinal DNA methylation differences precede type 1 diabetes.
Randi K Johnson, Lauren A Vanderlinden, Fran Dong, Patrick M Carry, Jennifer Seifert, Kathleen Waugh, Hanan Shorrosh, Tasha Fingerlin, Brigitte I Frohnert, Ivana V Yang,[...]. Sci Rep 2020
7

Tubulin Polymerization Promoting Protein (TPPP) gene methylation and corpus callosum measures in maltreated children.
Célia Maria de Araújo, James Hudziak, Deana Crocetti, Nicholas F Wymbs, Janitza L Montalvo-Ortiz, Catherine Orr, Matthew D Albaugh, Robert R Althoff, Kerry O'Loughlin, Hannah Holbrook,[...]. Psychiatry Res Neuroimaging 2020
1

Significant out-of-sample classification from methylation profile scoring for amyotrophic lateral sclerosis.
Marta F Nabais, Tian Lin, Beben Benyamin, Kelly L Williams, Fleur C Garton, Anna A E Vinkhuyzen, Futao Zhang, Costanza L Vallerga, Restuadi Restuadi, Anna Freydenzon,[...]. NPJ Genom Med 2020
4