A citation-based method for searching scientific literature

Volker Hovestadt, David T W Jones, Simone Picelli, Wei Wang, Marcel Kool, Paul A Northcott, Marc Sultan, Katharina Stachurski, Marina Ryzhova, Hans-Jörg Warnatz, Meryem Ralser, Sonja Brun, Jens Bunt, Natalie Jäger, Kortine Kleinheinz, Serap Erkek, Ursula D Weber, Cynthia C Bartholomae, Christof von Kalle, Chris Lawerenz, Jürgen Eils, Jan Koster, Rogier Versteeg, Till Milde, Olaf Witt, Sabine Schmidt, Stephan Wolf, Torsten Pietsch, Stefan Rutkowski, Wolfram Scheurlen, Michael D Taylor, Benedikt Brors, Jörg Felsberg, Guido Reifenberger, Arndt Borkhardt, Hans Lehrach, Robert J Wechsler-Reya, Roland Eils, Marie-Laure Yaspo, Pablo Landgraf, Andrey Korshunov, Marc Zapatka, Bernhard Radlwimmer, Stefan M Pfister, Peter Lichter. Nature 2014
Times Cited: 257



Benjamin P Berman, Daniel J Weisenberger, Joseph F Aman, Toshinori Hinoue, Zachary Ramjan, Yaping Liu, Houtan Noushmehr, Christopher P E Lange, Cornelis M van Dijk, Rob A E M Tollenaar, David Van Den Berg, Peter W Laird. Nat Genet 2011
Times Cited: 412




List of shared articles



Times cited

Aggressive PDACs Show Hypomethylation of Repetitive Elements and the Execution of an Intrinsic IFN Program Linked to a Ductal Cell of Origin.
Elisa Espinet, Zuguang Gu, Charles D Imbusch, Nathalia A Giese, Magdalena Büscher, Mariam Safavi, Silke Weisenburger, Corinna Klein, Vanessa Vogel, Mattia Falcone,[...]. Cancer Discov 2021
7

Navigating the DNA methylation landscape of cancer.
Atsuya Nishiyama, Makoto Nakanishi. Trends Genet 2021
2

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles.
Yan Huang, Pingping Wang, Wenyang Zhou, Meng Luo, Zhaochun Xu, Rui Cheng, Chang Xu, Xiyun Jin, Yiqun Li, Qinghua Jiang. Brief Bioinform 2021
0

Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma.
Yongsheng Huang, Qian Yang, Yueyuan Zheng, Lehang Lin, Xin Xu, Xiu-E Xu, Tiago C Silva, Masaharu Hazawa, Li Peng, Haotian Cao,[...]. Nucleic Acids Res 2021
0

The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability.
Jennifer Derrien, Catherine Guérin-Charbonnel, Victor Gaborit, Loïc Campion, Magali Devic, Elise Douillard, Nathalie Roi, Hervé Avet-Loiseau, Olivier Decaux, Thierry Facon,[...]. Genome Med 2021
0

Interplay between chromatin marks in development and disease.
Sanne M Janssen, Matthew C Lorincz. Nat Rev Genet 2021
0

Medulloblastomics revisited: biological and clinical insights from thousands of patients.
Volker Hovestadt, Olivier Ayrault, Fredrik J Swartling, Giles W Robinson, Stefan M Pfister, Paul A Northcott. Nat Rev Cancer 2020
44

Pilocytic astrocytoma demethylation and transcriptional landscapes link bZIP transcription factors to immune response.
Christian F Aichmüller, Murat Iskar, David T W Jones, Andrey Korshunov, Bernhard Radlwimmer, Marcel Kool, Aurelie Ernst, Stefan M Pfister, Peter Lichter, Marc Zapatka. Neuro Oncol 2020
3

Lineage-Specific Epigenomic and Genomic Activation of Oncogene HNF4A Promotes Gastrointestinal Adenocarcinomas.
Jian Pan, Tiago C Silva, Nicole Gull, Qian Yang, Jasmine T Plummer, Stephanie Chen, Kenji Daigo, Takao Hamakubo, Sigal Gery, Ling-Wen Ding,[...]. Cancer Res 2020
11

The DNA methylation landscape of advanced prostate cancer.
Shuang G Zhao, William S Chen, Haolong Li, Adam Foye, Meng Zhang, Martin Sjöström, Rahul Aggarwal, Denise Playdle, Arnold Liao, Joshi J Alumkal,[...]. Nat Genet 2020
45

ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles.
Tiago C Silva, Simon G Coetzee, Nicole Gull, Lijing Yao, Dennis J Hazelett, Houtan Noushmehr, De-Chen Lin, Benjamin P Berman. Bioinformatics 2019
27

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation.
Arie B Brinkman, Serena Nik-Zainal, Femke Simmer, F Germán Rodríguez-González, Marcel Smid, Ludmil B Alexandrov, Adam Butler, Sancha Martin, Helen Davies, Dominik Glodzik,[...]. Nat Commun 2019
16

Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks.
Jan-Philipp Mallm, Murat Iskar, Naveed Ishaque, Lara C Klett, Sabrina J Kugler, Jose M Muino, Vladimir B Teif, Alexandra M Poos, Sebastian Großmann, Fabian Erdel,[...]. Mol Syst Biol 2019
11

Identification of DNA motifs that regulate DNA methylation.
Mengchi Wang, Kai Zhang, Vu Ngo, Chengyu Liu, Shicai Fan, John W Whitaker, Yue Chen, Rizi Ai, Zhao Chen, Jun Wang,[...]. Nucleic Acids Res 2019
9

The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape.
Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht,[...]. Nature 2019
108

DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load.
Hyunchul Jung, Hong Sook Kim, Jeong Yeon Kim, Jong-Mu Sun, Jin Seok Ahn, Myung-Ju Ahn, Keunchil Park, Manel Esteller, Se-Hoon Lee, Jung Kyoon Choi. Nat Commun 2019
68

Statistical and integrative system-level analysis of DNA methylation data.
Andrew E Teschendorff, Caroline L Relton. Nat Rev Genet 2018
102