A citation-based method for searching scientific literature

Aziz El Hage, Shaun Webb, Alastair Kerr, David Tollervey. PLoS Genet 2014
Times Cited: 124



Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
Times Cited: 421




List of shared articles



Times cited

Association analysis of repetitive elements and R-loop formation across species.
Chao Zeng, Masahiro Onoguchi, Michiaki Hamada. Mob DNA 2021
0

Genomic profiling of native R loops with a DNA-RNA hybrid recognition sensor.
Kang Wang, Honghong Wang, Conghui Li, Zhinang Yin, Ruijing Xiao, Qiuzi Li, Ying Xiang, Wen Wang, Jian Huang, Liang Chen,[...]. Sci Adv 2021
3

Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids.
John A Smolka, Lionel A Sanz, Stella R Hartono, Frédéric Chédin. J Cell Biol 2021
8


Toward an understanding of the detection and function of R-loops in plants.
Jingjing Gao, Pengyue Zhang, Xinxu Li, Wenqi Wu, Hairong Wei, Wenli Zhang. J Exp Bot 2021
0

Defining R-loop classes and their contributions to genome instability.
Daisy Castillo-Guzman, Frédéric Chédin. DNA Repair (Amst) 2021
0

TDRD3 promotes DHX9 chromatin recruitment and R-loop resolution.
Wei Yuan, Qais Al-Hadid, Zhihao Wang, Lei Shen, Hyejin Cho, Xiwei Wu, Yanzhong Yang. Nucleic Acids Res 2021
0

Transcription-Replication Collisions-A Series of Unfortunate Events.
Commodore St Germain, Hongchang Zhao, Jacqueline H Barlow. Biomolecules 2021
0

R-loop and its functions at the regulatory interfaces between transcription and (epi)genome.
Arum Kim, Gang Greg Wang. Biochim Biophys Acta Gene Regul Mech 2021
0




Tumor treating fields cause replication stress and interfere with DNA replication fork maintenance: Implications for cancer therapy.
Narasimha Kumar Karanam, Lianghao Ding, Asaithamby Aroumougame, Michael D Story. Transl Res 2020
16

Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
66

The R-Loop Atlas of Arabidopsis Development and Responses to Environmental Stimuli.
Wei Xu, Kuan Li, Shuai Li, Quancan Hou, Yushun Zhang, Kunpeng Liu, Qianwen Sun. Plant Cell 2020
19


The dark side of RNA:DNA hybrids.
Alessandra Brambati, Luca Zardoni, Eleonora Nardini, Achille Pellicioli, Giordano Liberi. Mutat Res Rev Mutat Res 2020
12

New insight into the biology of R-loops.
Prasun Chakraborty. Mutat Res 2020
4

Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming.
Pengze Yan, Zunpeng Liu, Moshi Song, Zeming Wu, Wei Xu, Kuan Li, Qianzhao Ji, Si Wang, Xiaoqian Liu, Kaowen Yan,[...]. Cell Rep 2020
9


G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.
Giulia Miglietta, Marco Russo, Giovanni Capranico. Nucleic Acids Res 2020
16

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
181

Interplay between DNA sequence and negative superhelicity drives R-loop structures.
Robert Stolz, Shaheen Sulthana, Stella R Hartono, Maika Malig, Craig J Benham, Frederic Chedin. Proc Natl Acad Sci U S A 2019
36

Enhancer-mediated enrichment of interacting JMJD3-DDX21 to ENPP2 locus prevents R-loop formation and promotes transcription.
Deborah Argaud, Marie-Chloé Boulanger, Arnaud Chignon, Ghada Mkannez, Patrick Mathieu. Nucleic Acids Res 2019
9

R-loop-dependent replication and genomic instability in bacteria.
Marc Drolet, Julien Brochu. DNA Repair (Amst) 2019
12

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
121

Immunoprecipitation of RNA:DNA Hybrids from Budding Yeast.
Aziz El Hage, David Tollervey. Methods Mol Biol 2018
3

The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast.
Stella R Hartono, Amélie Malapert, Pénélope Legros, Pascal Bernard, Frédéric Chédin, Vincent Vanoosthuyse. J Mol Biol 2018
55

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
65

Yra1-bound RNA-DNA hybrids cause orientation-independent transcription-replication collisions and telomere instability.
María García-Rubio, Paula Aguilera, Juan Lafuente-Barquero, José F Ruiz, Marie-Noelle Simon, Vincent Geli, Ana G Rondón, Andrés Aguilera. Genes Dev 2018
35

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
52

Topoisomerases I and III inhibit R-loop formation to prevent unregulated replication in the chromosomal Ter region of Escherichia coli.
Julien Brochu, Émilie Vlachos-Breton, Sarah Sutherland, Makisha Martel, Marc Drolet. PLoS Genet 2018
16

Genome-wide mapping reveals conserved and diverged R-loop activities in the unusual genetic landscape of the African trypanosome genome.
Emma Briggs, Graham Hamilton, Kathryn Crouch, Craig Lapsley, Richard McCulloch. Nucleic Acids Res 2018
12

Sae2/CtIP prevents R-loop accumulation in eukaryotic cells.
Nodar Makharashvili, Sucheta Arora, Yizhi Yin, Qiong Fu, Xuemei Wen, Ji-Hoon Lee, Chung-Hsuan Kao, Justin Wc Leung, Kyle M Miller, Tanya T Paull. Elife 2018
31

Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1.
Hai Dang Nguyen, Tribhuwan Yadav, Sumanprava Giri, Borja Saez, Timothy A Graubert, Lee Zou. Mol Cell 2017
108

RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases.
László Halász, Zsolt Karányi, Beáta Boros-Oláh, Tímea Kuik-Rózsa, Éva Sipos, Éva Nagy, Ágnes Mosolygó-L, Anett Mázló, Éva Rajnavölgyi, Gábor Halmos,[...]. Genome Res 2017
42

DNA-RNA hybrids: the risks of DNA breakage during transcription.
Andrés Aguilera, Belén Gómez-González. Nat Struct Mol Biol 2017
72

Introns Protect Eukaryotic Genomes from Transcription-Associated Genetic Instability.
Amandine Bonnet, Ana R Grosso, Abdessamad Elkaoutari, Emeline Coleno, Adrien Presle, Sreerama C Sridhara, Guilhem Janbon, Vincent Géli, Sérgio F de Almeida, Benoit Palancade. Mol Cell 2017
52

The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
69


RNase H1 Cooperates with DNA Gyrases to Restrict R-Loops and Maintain Genome Integrity in Arabidopsis Chloroplasts.
Zhuo Yang, Quancan Hou, Lingling Cheng, Wei Xu, Yantao Hong, Shuai Li, Qianwen Sun. Plant Cell 2017
29

Dynamic nucleoplasmic and nucleolar localization of mammalian RNase H1 in response to RNAP I transcriptional R-loops.
Wen Shen, Hong Sun, Cheryl L De Hoyos, Jeffrey K Bailey, Xue-Hai Liang, Stanley T Crooke. Nucleic Acids Res 2017
23

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
111