A citation-based method for searching scientific literature

Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
Times Cited: 1323



Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu, Mark T Gregory, Joe Shuga, Luz Montesclaros, Jason G Underwood, Donald A Masquelier, Stefanie Y Nishimura, Michael Schnall-Levin, Paul W Wyatt, Christopher M Hindson, Rajiv Bharadwaj, Alexander Wong, Kevin D Ness, Lan W Beppu, H Joachim Deeg, Christopher McFarland, Keith R Loeb, William J Valente, Nolan G Ericson, Emily A Stevens, Jerald P Radich, Tarjei S Mikkelsen, Benjamin J Hindson, Jason H Bielas. Nat Commun 2017
Times Cited: 1459




List of shared articles



Times cited

Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments.
Xiaoqing Yu, Farnoosh Abbas-Aghababazadeh, Y Ann Chen, Brooke L Fridley. Methods Mol Biol 2021
1


Single-cell profiling reveals the trajectories of natural killer cell differentiation in bone marrow and a stress signature induced by acute myeloid leukemia.
Adeline Crinier, Pierre-Yves Dumas, Bertrand Escalière, Christelle Piperoglou, Laurine Gil, Arnaud Villacreces, Frédéric Vély, Zoran Ivanovic, Pierre Milpied, Émilie Narni-Mancinelli,[...]. Cell Mol Immunol 2021
8

FEATS: feature selection-based clustering of single-cell RNA-seq data.
Edwin Vans, Ashwini Patil, Alok Sharma. Brief Bioinform 2021
3

Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids.
Jeremy J Velazquez, Ryan LeGraw, Farzaneh Moghadam, Yuqi Tan, Jacquelyn Kilbourne, Joseph C Maggiore, Joshua Hislop, Silvia Liu, Davy Cats, Susana M Chuva de Sousa Lopes,[...]. Cell Syst 2021
12

Identification and Characterization of Zebrafish Tlr4 Coreceptor Md-2.
Andrea N Loes, Melissa N Hinman, Dylan R Farnsworth, Adam C Miller, Karen Guillemin, Michael J Harms. J Immunol 2021
4

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
3

Chemotherapy Induces Senescence-Like Resilient Cells Capable of Initiating AML Recurrence.
Cihangir Duy, Meng Li, Matt Teater, Cem Meydan, Francine E Garrett-Bakelman, Tak C Lee, Christopher R Chin, Ceyda Durmaz, Kimihito C Kawabata, Eugen Dhimolea,[...]. Cancer Discov 2021
12

Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.
Xitiz Chamling, Alyssa Kallman, Weixiang Fang, Cynthia A Berlinicke, Joseph L Mertz, Prajwal Devkota, Itzy E Morales Pantoja, Matthew D Smith, Zhicheng Ji, Calvin Chang,[...]. Nat Commun 2021
4


Next Generation Imaging Techniques to Define Immune Topographies in Solid Tumors.
Violena Pietrobon, Alessandra Cesano, Francesco Marincola, Jakob Nikolas Kather. Front Immunol 2021
4

Application of single-cell transcriptomics to kinetoplastid research.
Emma M Briggs, Felix S L Warren, Keith R Matthews, Richard McCulloch, Thomas D Otto. Parasitology 2021
2

Model-based deep embedding for constrained clustering analysis of single cell RNA-seq data.
Tian Tian, Jie Zhang, Xiang Lin, Zhi Wei, Hakon Hakonarson. Nat Commun 2021
2

scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropy.
Zechuan Chen, Zeruo Yang, Xiaojun Yuan, Xiaoming Zhang, Pei Hao. BMC Bioinformatics 2021
0

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.
Mingxuan Gao, Mingyi Ling, Xinwei Tang, Shun Wang, Xu Xiao, Ying Qiao, Wenxian Yang, Rongshan Yu. Brief Bioinform 2021
1

Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods.
Zoe A Clarke, Tallulah S Andrews, Jawairia Atif, Delaram Pouyabahar, Brendan T Innes, Sonya A MacParland, Gary D Bader. Nat Protoc 2021
0

Boosting scRNA-seq data clustering by cluster-aware feature weighting.
Rui-Yi Li, Jihong Guan, Shuigeng Zhou. BMC Bioinformatics 2021
0

Loss of Gap Junction Delta-2 (GJD2) gene orthologs leads to refractive error in zebrafish.
Wim H Quint, Kirke C D Tadema, Erik de Vrieze, Rachel M Lukowicz, Sanne Broekman, Beerend H J Winkelman, Melanie Hoevenaars, H Martijn de Gruiter, Erwin van Wijk, Frank Schaeffel,[...]. Commun Biol 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Individual B cells transcribe multiple rearranged immunoglobulin light chains in teleost fish.
Pedro Perdiguero, Esther Morel, Patricia Díaz-Rosales, Carolina Tafalla. iScience 2021
0

Normalization by distributional resampling of high throughput single-cell RNA-sequencing data.
Jared Brown, Zijian Ni, Chitrasen Mohanty, Rhonda Bacher, Christina Kendziorski. Bioinformatics 2021
0

Single-Cell RNA-seq Identification of the Cellular Molecular Characteristics of Sporadic Bilateral Clear Cell Renal Cell Carcinoma.
Zhenyuan Yu, Wenhao Lu, Cheng Su, Yufang Lv, Yu Ye, Bingqian Guo, Deyun Liu, Haibiao Yan, Hua Mi, Tianyu Li,[...]. Front Oncol 2021
1