A citation-based method for searching scientific literature

Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
Times Cited: 1367



Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Times Cited: 2641




List of shared articles



Times cited

Model-based autoencoders for imputing discrete single-cell RNA-seq data.
Tian Tian, Martin Renqiang Min, Zhi Wei. Methods 2021
2

Single-cell RNA sequencing in vision research: Insights into human retinal health and disease.
Andrew P Voigt, Nathaniel K Mullin, Edwin M Stone, Budd A Tucker, Todd E Scheetz, Robert F Mullins. Prog Retin Eye Res 2021
4

Multi-domain translation between single-cell imaging and sequencing data using autoencoders.
Karren Dai Yang, Anastasiya Belyaeva, Saradha Venkatachalapathy, Karthik Damodaran, Abigail Katcoff, Adityanarayanan Radhakrishnan, G V Shivashankar, Caroline Uhler. Nat Commun 2021
11

Gut-licensed IFNγ+ NK cells drive LAMP1+TRAIL+ anti-inflammatory astrocytes.
Liliana M Sanmarco, Michael A Wheeler, Cristina Gutiérrez-Vázquez, Carolina Manganeli Polonio, Mathias Linnerbauer, Felipe A Pinho-Ribeiro, Zhaorong Li, Federico Giovannoni, Katelyn V Batterman, Giulia Scalisi,[...]. Nature 2021
30

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
3

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
3

Activity-dependent regulome of human GABAergic neurons reveals new patterns of gene regulation and neurological disease heritability.
Gabriella L Boulting, Ershela Durresi, Bulent Ataman, Maxwell A Sherman, Kevin Mei, David A Harmin, Ava C Carter, Daniel R Hochbaum, Adam J Granger, Jesse M Engreitz,[...]. Nat Neurosci 2021
1

Tracing production instability in a clonally derived CHO cell line using single-cell transcriptomics.
Ioanna Tzani, Nicholas Herrmann, Sara Carillo, Cathy A Spargo, Ryan Hagan, Niall Barron, Jonathan Bones, W Shannon Dillmore, Colin Clarke. Biotechnol Bioeng 2021
0

Single-cell RNA sequencing reveals developmental heterogeneity among Plasmodium berghei sporozoites.
Anthony A Ruberto, Caitlin Bourke, Nicolas Merienne, Thomas Obadia, Rogerio Amino, Ivo Mueller. Sci Rep 2021
2

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, Antonio Grimaldi, Valentina Bouché, Gennaro Gambardella, Davide Cacchiarelli. Methods Mol Biol 2021
1

Differential gene expression analysis for multi-subject single cell RNA sequencing studies with aggregateBioVar.
Andrew L Thurman, Jason A Ratcliff, Michael S Chimenti, Alejandro A Pezzulo. Bioinformatics 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects.
Lu Huo, Jiao Jiao Li, Ling Chen, Zuguo Yu, Gyorgy Hutvagner, Jinyan Li. Brief Bioinform 2021
0

Normalization by distributional resampling of high throughput single-cell RNA-sequencing data.
Jared Brown, Zijian Ni, Chitrasen Mohanty, Rhonda Bacher, Christina Kendziorski. Bioinformatics 2021
0

Tissue signals imprint Aiolos expression in ILC2s to modulate type 2 immunity.
Jinxin Qiu, Jingjing Zhang, Yan Ji, Hanxiao Sun, Zhitao Gu, Qiangling Sun, Meizhu Bai, Jue Gong, Jupei Tang, Yunpeng Zhang,[...]. Mucosal Immunol 2021
1

Hedgehog interacting protein-expressing lung fibroblasts suppress lymphocytic inflammation in mice.
Jeong H Yun, ChangHee Lee, Tao Liu, Siqi Liu, Edy Y Kim, Shuang Xu, Jeffrey L Curtis, Luca Pinello, Russell P Bowler, Edwin K Silverman,[...]. JCI Insight 2021
0

Diversity of Reactive Astrogliosis in CNS Pathology: Heterogeneity or Plasticity?
Aaron J Moulson, Jordan W Squair, Robin J M Franklin, Wolfram Tetzlaff, Peggy Assinck. Front Cell Neurosci 2021
1

COTAN: scRNA-seq data analysis based on gene co-expression.
Silvia Giulia Galfrè, Francesco Morandin, Marco Pietrosanto, Federico Cremisi, Manuela Helmer-Citterich. NAR Genom Bioinform 2021
1

Single-cell analysis of cell fate bifurcation in the chordate Ciona.
Konner M Winkley, Wendy M Reeves, Michael T Veeman. BMC Biol 2021
0


The establishment of variant surface glycoprotein monoallelic expression revealed by single-cell RNA-seq of Trypanosoma brucei in the tsetse fly salivary glands.
Sebastian Hutchinson, Sophie Foulon, Aline Crouzols, Roberta Menafra, Brice Rotureau, Andrew D Griffiths, Philippe Bastin. PLoS Pathog 2021
0

A review of computational strategies for denoising and imputation of single-cell transcriptomic data.
Lucrezia Patruno, Davide Maspero, Francesco Craighero, Fabrizio Angaroni, Marco Antoniotti, Alex Graudenzi. Brief Bioinform 2021
0

Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.
Aaron A May-Zhang, Eric Tycksen, Austin N Southard-Smith, Karen K Deal, Joseph T Benthal, Dennis P Buehler, Mike Adam, Alan J Simmons, James R Monaghan, Brittany K Matlock,[...]. Gastroenterology 2021
11


Looking at the developing lung in single-cell resolution.
I Mižíková, B Thébaud. Am J Physiol Lung Cell Mol Physiol 2021
0