A citation-based method for searching scientific literature

Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck, John J Trombetta, David A Weitz, Joshua R Sanes, Alex K Shalek, Aviv Regev, Steven A McCarroll. Cell 2015
Times Cited: 2458



Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu, Mark T Gregory, Joe Shuga, Luz Montesclaros, Jason G Underwood, Donald A Masquelier, Stefanie Y Nishimura, Michael Schnall-Levin, Paul W Wyatt, Christopher M Hindson, Rajiv Bharadwaj, Alexander Wong, Kevin D Ness, Lan W Beppu, H Joachim Deeg, Christopher McFarland, Keith R Loeb, William J Valente, Nolan G Ericson, Emily A Stevens, Jerald P Radich, Tarjei S Mikkelsen, Benjamin J Hindson, Jason H Bielas. Nat Commun 2017
Times Cited: 1288




List of shared articles



Times cited


FEATS: feature selection-based clustering of single-cell RNA-seq data.
Edwin Vans, Ashwini Patil, Alok Sharma. Brief Bioinform 2021
1


A cell atlas of the chick retina based on single-cell transcriptomics.
Masahito Yamagata, Wenjun Yan, Joshua R Sanes. Elife 2021
4

Multi-domain translation between single-cell imaging and sequencing data using autoencoders.
Karren Dai Yang, Anastasiya Belyaeva, Saradha Venkatachalapathy, Karthik Damodaran, Abigail Katcoff, Adityanarayanan Radhakrishnan, G V Shivashankar, Caroline Uhler. Nat Commun 2021
6

Single-Cell RNA Sequencing to Disentangle the Blood System.
Jean Acosta, Daniel Ssozi, Peter van Galen. Arterioscler Thromb Vasc Biol 2021
0

Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes.
Ruli Gao, Shanshan Bai, Ying C Henderson, Yiyun Lin, Aislyn Schalck, Yun Yan, Tapsi Kumar, Min Hu, Emi Sei, Alexander Davis,[...]. Nat Biotechnol 2021
4

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
2

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
2

Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.
Xitiz Chamling, Alyssa Kallman, Weixiang Fang, Cynthia A Berlinicke, Joseph L Mertz, Prajwal Devkota, Itzy E Morales Pantoja, Matthew D Smith, Zhicheng Ji, Calvin Chang,[...]. Nat Commun 2021
2

Imaging-based screens of pool-synthesized cell libraries.
Michael Lawson, Johan Elf. Nat Methods 2021
0

The current landscape of single-cell transcriptomics for cancer immunotherapy.
Puneeth Guruprasad, Yong Gu Lee, Ki Hyun Kim, Marco Ruella. J Exp Med 2021
3

Proteolysis-targeting chimera against BCL-XL destroys tumor-infiltrating regulatory T cells.
Ryan Kolb, Umasankar De, Sajid Khan, Yuewan Luo, Myung-Chul Kim, Haijun Yu, Chaoyan Wu, Jiao Mo, Xin Zhang, Peiyi Zhang,[...]. Nat Commun 2021
2

Ex uno, plures-From One Tissue to Many Cells: A Review of Single-Cell Transcriptomics in Cardiovascular Biology.
Elvira Forte, Micheal A McLellan, Daniel A Skelly, Nadia A Rosenthal. Int J Mol Sci 2021
0

Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-seq data.
Krishan Gupta, Manan Lalit, Aditya Biswas, Chad D Sanada, Cassandra Greene, Kyle Hukari, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Naveen Ramalingam, Gaurav Ahuja,[...]. Genome Res 2021
0

Fibroblastic reticular cell lineage convergence in Peyer's patches governs intestinal immunity.
Alejandro Prados, Lucas Onder, Hung-Wei Cheng, Urs Mörbe, Mechthild Lütge, Cristina Gil-Cruz, Christian Perez-Shibayama, Vasiliki Koliaraki, Burkhard Ludewig, George Kollias. Nat Immunol 2021
2

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, Antonio Grimaldi, Valentina Bouché, Gennaro Gambardella, Davide Cacchiarelli. Methods Mol Biol 2021
0

Single-Cell RNA Sequencing in Parkinson's Disease.
Shi-Xun Ma, Su Bin Lim. Biomedicines 2021
0

Single-cell technologies and analyses in hematopoiesis and hematological malignancies.
Ignacio Campillo-Marcos, Damiana Alvarez-Errico, Regina A Alandes, Elisabetta Mereu, Manel Esteller. Exp Hematol 2021
0

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Detection of differentially abundant cell subpopulations in scRNA-seq data.
Jun Zhao, Ariel Jaffe, Henry Li, Ofir Lindenbaum, Esen Sefik, Ruaidhrí Jackson, Xiuyuan Cheng, Richard A Flavell, Yuval Kluger. Proc Natl Acad Sci U S A 2021
0

Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies.
Wilton B Williams, R Ryan Meyerhoff, R J Edwards, Hui Li, Kartik Manne, Nathan I Nicely, Rory Henderson, Ye Zhou, Katarzyna Janowska, Katayoun Mansouri,[...]. Cell 2021
1

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.
Mingxuan Gao, Mingyi Ling, Xinwei Tang, Shun Wang, Xu Xiao, Ying Qiao, Wenxian Yang, Rongshan Yu. Brief Bioinform 2021
0


Single-Cell Analysis of Hematopoietic Stem Cells.
Katherine H M Sturgess, Fernando J Calero-Nieto, Berthold Göttgens, Nicola K Wilson. Methods Mol Biol 2021
0

Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing.
Paul Datlinger, André F Rendeiro, Thorina Boenke, Martin Senekowitsch, Thomas Krausgruber, Daniele Barreca, Christoph Bock. Nat Methods 2021
1

The Known Unknowns of the Immune Response to Coccidioides.
Rebecca A Ward, George R Thompson, Alexandra-Chloé Villani, Bo Li, Michael K Mansour, Marcel Wuethrich, Jenny M Tam, Bruce S Klein, Jatin M Vyas. J Fungi (Basel) 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Model-based autoencoders for imputing discrete single-cell RNA-seq data.
Tian Tian, Martin Renqiang Min, Zhi Wei. Methods 2021
1

Single-cell RNA sequencing in vision research: Insights into human retinal health and disease.
Andrew P Voigt, Nathaniel K Mullin, Edwin M Stone, Budd A Tucker, Todd E Scheetz, Robert F Mullins. Prog Retin Eye Res 2021
1

A multi-center cross-platform single-cell RNA sequencing reference dataset.
Xin Chen, Zhaowei Yang, Wanqiu Chen, Yongmei Zhao, Andrew Farmer, Bao Tran, Vyacheslav Furtak, Malcolm Moos, Wenming Xiao, Charles Wang. Sci Data 2021
0

Accurate feature selection improves single-cell RNA-seq cell clustering.
Kenong Su, Tianwei Yu, Hao Wu. Brief Bioinform 2021
0

Single-cell RNA sequencing reveals developmental heterogeneity among Plasmodium berghei sporozoites.
Anthony A Ruberto, Caitlin Bourke, Nicolas Merienne, Thomas Obadia, Rogerio Amino, Ivo Mueller. Sci Rep 2021
0