A citation-based method for searching scientific literature

Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck, John J Trombetta, David A Weitz, Joshua R Sanes, Alex K Shalek, Aviv Regev, Steven A McCarroll. Cell 2015
Times Cited: 2458



Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Times Cited: 2220




List of shared articles



Times cited

Sequencing dropout-and-batch effect normalization for single-cell mRNA profiles: a survey and comparative analysis.
Tian Lan, Gyorgy Hutvagner, Qing Lan, Tao Liu, Jinyan Li. Brief Bioinform 2021
0

FEATS: feature selection-based clustering of single-cell RNA-seq data.
Edwin Vans, Ashwini Patil, Alok Sharma. Brief Bioinform 2021
1

Multi-domain translation between single-cell imaging and sequencing data using autoencoders.
Karren Dai Yang, Anastasiya Belyaeva, Saradha Venkatachalapathy, Karthik Damodaran, Abigail Katcoff, Adityanarayanan Radhakrishnan, G V Shivashankar, Caroline Uhler. Nat Commun 2021
6

CREBBP/EP300 mutations promoted tumor progression in diffuse large B-cell lymphoma through altering tumor-associated macrophage polarization via FBXW7-NOTCH-CCL2/CSF1 axis.
Yao-Hui Huang, Kun Cai, Peng-Peng Xu, Li Wang, Chuan-Xin Huang, Ying Fang, Shu Cheng, Xiao-Jian Sun, Feng Liu, Jin-Yan Huang,[...]. Signal Transduct Target Ther 2021
0

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
2

Persistence of mature dendritic cells, TH2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade.
Christine Bangert, Katharina Rindler, Thomas Krausgruber, Natalia Alkon, Felix M Thaler, Harald Kurz, Tanya Ayub, Denis Demirtas, Nikolaus Fortelny, Vera Vorstandlechner,[...]. Sci Immunol 2021
3

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
2

Modeling expression ranks for noise-tolerant differential expression analysis of scRNA-seq data.
Krishan Gupta, Manan Lalit, Aditya Biswas, Chad D Sanada, Cassandra Greene, Kyle Hukari, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Naveen Ramalingam, Gaurav Ahuja,[...]. Genome Res 2021
0

Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis.
Zhiyong Liu, Zhonghua Sun, Hongyun Liu, Weipin Niu, Xin Wang, Na Liang, Xin Wang, Yanfei Wang, Yaxin Shi, Li Xu,[...]. Cell Biosci 2021
1

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, Antonio Grimaldi, Valentina Bouché, Gennaro Gambardella, Davide Cacchiarelli. Methods Mol Biol 2021
0

Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype.
Fátima Valdés-Mora, Robert Salomon, Brian Stewart Gloss, Andrew Man Kit Law, Jeron Venhuizen, Lesley Castillo, Kendelle Joan Murphy, Astrid Magenau, Michael Papanicolaou, Laura Rodriguez de la Fuente,[...]. Cell Rep 2021
0

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma.
Ailu Chen, Maria P Diaz-Soto, Miguel F Sanmamed, Taylor Adams, Jonas C Schupp, Amolika Gupta, Clemente Britto, Maor Sauler, Xiting Yan, Qing Liu,[...]. Respir Res 2021
0

Gene Expression Analysis of T-Cells by Single-Cell RNA-Seq.
Domenico Lo Tartaro, Sara De Biasi, Mattia Forcato, Lara Gibellini, Andrea Cossarizza. Methods Mol Biol 2021
0

Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition.
Gianni Carraro, Justin Langerman, Shan Sabri, Zareeb Lorenzana, Arunima Purkayastha, Guangzhu Zhang, Bindu Konda, Cody J Aros, Ben A Calvert, Aleks Szymaniak,[...]. Nat Med 2021
0

Single-cell technologies and analyses in hematopoiesis and hematological malignancies.
Ignacio Campillo-Marcos, Damiana Alvarez-Errico, Regina A Alandes, Elisabetta Mereu, Manel Esteller. Exp Hematol 2021
0

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Detection of differentially abundant cell subpopulations in scRNA-seq data.
Jun Zhao, Ariel Jaffe, Henry Li, Ofir Lindenbaum, Esen Sefik, Ruaidhrí Jackson, Xiuyuan Cheng, Richard A Flavell, Yuval Kluger. Proc Natl Acad Sci U S A 2021
0

Cryptic developmental events determine medulloblastoma radiosensitivity and cellular heterogeneity without altering transcriptomic profile.
Daniel Shiloh Malawsky, Seth J Weir, Jennifer Karin Ocasio, Benjamin Babcock, Taylor Dismuke, Abigail H Cleveland, Andrew M Donson, Rajeev Vibhakar, Kirk Wilhelmsen, Timothy R Gershon. Commun Biol 2021
1


A Subpopulation of Schwann Cell-Like Cells With Nerve Regeneration Signatures Is Identified Through Single-Cell RNA Sequencing.
Zairong Wei, Shenyou Shu, Mingjun Zhang, Sitian Xie, Shijie Tang, Kaiyu Nie, Haihong Li. Front Physiol 2021
0

Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Single-cell RNA sequencing reveals the mechanism of sonodynamic therapy combined with a RAS inhibitor in the setting of hepatocellular carcinoma.
Bolin Wu, Yanchi Yuan, Jiayin Liu, Haitao Shang, Jing Dong, Xitian Liang, Dongxu Wang, Yichi Chen, Chunyue Wang, Yang Zhou,[...]. J Nanobiotechnology 2021
0

Model-based autoencoders for imputing discrete single-cell RNA-seq data.
Tian Tian, Martin Renqiang Min, Zhi Wei. Methods 2021
1

Deep feature extraction of single-cell transcriptomes by generative adversarial network.
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R Rabiee, Yue Li. Bioinformatics 2021
0

Transcriptional dynamics of induced pluripotent stem cell differentiation into β cells reveals full endodermal commitment and homology with human islets.
Silvia Pellegrini, Raniero Chimienti, Giulia Maria Scotti, Francesca Giannese, Dejan Lazarevic, Fabio Manenti, Gaia Poggi, Marta Tiffany Lombardo, Alessandro Cospito, Rita Nano,[...]. Cytotherapy 2021
1

Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential.
Siyi Huang, Carly G K Ziegler, John Austin, Najat Mannoun, Marko Vukovic, Jose Ordovas-Montanes, Alex K Shalek, Ulrich H von Andrian. Cell 2021
10

Decoding Human Megakaryocyte Development.
Hongtao Wang, Jian He, Changlu Xu, Xiaoyuan Chen, Hua Yang, Shujuan Shi, Cuicui Liu, Yang Zeng, Dan Wu, Zhijie Bai,[...]. Cell Stem Cell 2021
2

Single-cell RNA sequencing in vision research: Insights into human retinal health and disease.
Andrew P Voigt, Nathaniel K Mullin, Edwin M Stone, Budd A Tucker, Todd E Scheetz, Robert F Mullins. Prog Retin Eye Res 2021
1

Gut-licensed IFNγ+ NK cells drive LAMP1+TRAIL+ anti-inflammatory astrocytes.
Liliana M Sanmarco, Michael A Wheeler, Cristina Gutiérrez-Vázquez, Carolina Manganeli Polonio, Mathias Linnerbauer, Felipe A Pinho-Ribeiro, Zhaorong Li, Federico Giovannoni, Katelyn V Batterman, Giulia Scalisi,[...]. Nature 2021
14

Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes.
Ethan J Armand, Junhao Li, Fangming Xie, Chongyuan Luo, Eran A Mukamel. Neuron 2021
4

Selecting single cell clustering parameter values using subsampling-based robustness metrics.
Ryan B Patterson-Cross, Ariel J Levine, Vilas Menon. BMC Bioinformatics 2021
0

A multi-center cross-platform single-cell RNA sequencing reference dataset.
Xin Chen, Zhaowei Yang, Wanqiu Chen, Yongmei Zhao, Andrew Farmer, Bao Tran, Vyacheslav Furtak, Malcolm Moos, Wenming Xiao, Charles Wang. Sci Data 2021
0

Single-cell RNA sequencing reveals developmental heterogeneity among Plasmodium berghei sporozoites.
Anthony A Ruberto, Caitlin Bourke, Nicolas Merienne, Thomas Obadia, Rogerio Amino, Ivo Mueller. Sci Rep 2021
0