A citation-based method for searching scientific literature

Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck, John J Trombetta, David A Weitz, Joshua R Sanes, Alex K Shalek, Aviv Regev, Steven A McCarroll. Cell 2015
Times Cited: 2458



Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
Times Cited: 1533




List of shared articles



Times cited

PsychENCODE and beyond: transcriptomics and epigenomics of brain development and organoids.
Alexandre Jourdon, Soraya Scuderi, Davide Capauto, Alexej Abyzov, Flora M Vaccarino. Neuropsychopharmacology 2021
1

Spatial molecular profiling: platforms, applications and analysis tools.
Minzhe Zhang, Thomas Sheffield, Xiaowei Zhan, Qiwei Li, Donghan M Yang, Yunguan Wang, Shidan Wang, Yang Xie, Tao Wang, Guanghua Xiao. Brief Bioinform 2021
1


A cell atlas of the chick retina based on single-cell transcriptomics.
Masahito Yamagata, Wenjun Yan, Joshua R Sanes. Elife 2021
4

Multi-domain translation between single-cell imaging and sequencing data using autoencoders.
Karren Dai Yang, Anastasiya Belyaeva, Saradha Venkatachalapathy, Karthik Damodaran, Abigail Katcoff, Adityanarayanan Radhakrishnan, G V Shivashankar, Caroline Uhler. Nat Commun 2021
6

Approaches for the integration of big data in translational medicine: single-cell and computational methods.
Farzane Amirmahani, Nasim Ebrahimi, Fatemeh Molaei, Ferdos Faghihkhorasani, Kiarash Jamshidi Goharrizi, Seyede Masoumeh Mirtaghi, Marziyeh Borjian-Boroujeni, Michael R Hamblin. Ann N Y Acad Sci 2021
2

Single-Cell RNA Sequencing to Disentangle the Blood System.
Jean Acosta, Daniel Ssozi, Peter van Galen. Arterioscler Thromb Vasc Biol 2021
0

Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes.
Ruli Gao, Shanshan Bai, Ying C Henderson, Yiyun Lin, Aislyn Schalck, Yun Yan, Tapsi Kumar, Min Hu, Emi Sei, Alexander Davis,[...]. Nat Biotechnol 2021
4

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
2

Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.
Xitiz Chamling, Alyssa Kallman, Weixiang Fang, Cynthia A Berlinicke, Joseph L Mertz, Prajwal Devkota, Itzy E Morales Pantoja, Matthew D Smith, Zhicheng Ji, Calvin Chang,[...]. Nat Commun 2021
2

Hypothalamic hormone-sensitive lipase regulates appetite and energy homeostasis.
Cecilie Hundahl, Petra Kotzbeck, Hayley B Burm, Søren H Christiansen, Lola Torz, Aske W Helge, Martin P Madsen, Cecilia Ratner, Annette K Serup, Jonatan J Thompson,[...]. Mol Metab 2021
0

GLP-1 receptor signaling increases PCSK1 and β cell features in human α cells.
Mridusmita Saikia, Marlena M Holter, Leanne R Donahue, Isaac S Lee, Qiaonan C Zheng, Journey L Wise, Jenna E Todero, Daryl J Phuong, Darline Garibay, Reilly Coch,[...]. JCI Insight 2021
0

Joint profiling of histone modifications and transcriptome in single cells from mouse brain.
Chenxu Zhu, Yanxiao Zhang, Yang Eric Li, Jacinta Lucero, M Margarita Behrens, Bing Ren. Nat Methods 2021
4

Fibroblastic reticular cell lineage convergence in Peyer's patches governs intestinal immunity.
Alejandro Prados, Lucas Onder, Hung-Wei Cheng, Urs Mörbe, Mechthild Lütge, Cristina Gil-Cruz, Christian Perez-Shibayama, Vasiliki Koliaraki, Burkhard Ludewig, George Kollias. Nat Immunol 2021
2

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, Antonio Grimaldi, Valentina Bouché, Gennaro Gambardella, Davide Cacchiarelli. Methods Mol Biol 2021
0

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma.
Ailu Chen, Maria P Diaz-Soto, Miguel F Sanmamed, Taylor Adams, Jonas C Schupp, Amolika Gupta, Clemente Britto, Maor Sauler, Xiting Yan, Qing Liu,[...]. Respir Res 2021
0

Single-Cell RNA Sequencing in Parkinson's Disease.
Shi-Xun Ma, Su Bin Lim. Biomedicines 2021
0

Gene Expression Analysis of T-Cells by Single-Cell RNA-Seq.
Domenico Lo Tartaro, Sara De Biasi, Mattia Forcato, Lara Gibellini, Andrea Cossarizza. Methods Mol Biol 2021
0

Generation of hypothalamic arcuate organoids from human induced pluripotent stem cells.
Wei-Kai Huang, Samuel Zheng Hao Wong, Sarshan R Pather, Phuong T T Nguyen, Feng Zhang, Daniel Y Zhang, Zhijian Zhang, Lu Lu, Wanqi Fang, Luyun Chen,[...]. Cell Stem Cell 2021
0

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Detection of differentially abundant cell subpopulations in scRNA-seq data.
Jun Zhao, Ariel Jaffe, Henry Li, Ofir Lindenbaum, Esen Sefik, Ruaidhrí Jackson, Xiuyuan Cheng, Richard A Flavell, Yuval Kluger. Proc Natl Acad Sci U S A 2021
0

Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies.
Wilton B Williams, R Ryan Meyerhoff, R J Edwards, Hui Li, Kartik Manne, Nathan I Nicely, Rory Henderson, Ye Zhou, Katarzyna Janowska, Katayoun Mansouri,[...]. Cell 2021
1


Analysis of single-cell RNA sequencing data based on autoencoders.
Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Pietro Liò, Ana Cvejic. BMC Bioinformatics 2021
0

Cell type prioritization in single-cell data.
Michael A Skinnider, Jordan W Squair, Claudia Kathe, Mark A Anderson, Matthieu Gautier, Kaya J E Matson, Marco Milano, Thomas H Hutson, Quentin Barraud, Aaron A Phillips,[...]. Nat Biotechnol 2021
6

STAB: a spatio-temporal cell atlas of the human brain.
Liting Song, Shaojun Pan, Zichao Zhang, Longhao Jia, Wei-Hua Chen, Xing-Ming Zhao. Nucleic Acids Res 2021
2

Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential.
Siyi Huang, Carly G K Ziegler, John Austin, Najat Mannoun, Marko Vukovic, Jose Ordovas-Montanes, Alex K Shalek, Ulrich H von Andrian. Cell 2021
10

Gut-licensed IFNγ+ NK cells drive LAMP1+TRAIL+ anti-inflammatory astrocytes.
Liliana M Sanmarco, Michael A Wheeler, Cristina Gutiérrez-Vázquez, Carolina Manganeli Polonio, Mathias Linnerbauer, Felipe A Pinho-Ribeiro, Zhaorong Li, Federico Giovannoni, Katelyn V Batterman, Giulia Scalisi,[...]. Nature 2021
14

Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes.
Ethan J Armand, Junhao Li, Fangming Xie, Chongyuan Luo, Eran A Mukamel. Neuron 2021
4

Selecting single cell clustering parameter values using subsampling-based robustness metrics.
Ryan B Patterson-Cross, Ariel J Levine, Vilas Menon. BMC Bioinformatics 2021
0

A multi-center cross-platform single-cell RNA sequencing reference dataset.
Xin Chen, Zhaowei Yang, Wanqiu Chen, Yongmei Zhao, Andrew Farmer, Bao Tran, Vyacheslav Furtak, Malcolm Moos, Wenming Xiao, Charles Wang. Sci Data 2021
0

Single-cell RNA sequencing reveals developmental heterogeneity among Plasmodium berghei sporozoites.
Anthony A Ruberto, Caitlin Bourke, Nicolas Merienne, Thomas Obadia, Rogerio Amino, Ivo Mueller. Sci Rep 2021
0