A citation-based method for searching scientific literature

Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E Mason, Noah Alexander, Elizabeth Henaff, Alexa B R McIntyre, Dhruva Chandramohan, Feng Chen, Erich Jaeger, Ali Moshrefi, Khoa Pham, William Stedman, Tiffany Liang, Michael Saghbini, Zeljko Dzakula, Alex Hastie, Han Cao, Gintaras Deikus, Eric Schadt, Robert Sebra, Ali Bashir, Rebecca M Truty, Christopher C Chang, Natali Gulbahce, Keyan Zhao, Srinka Ghosh, Fiona Hyland, Yutao Fu, Mark Chaisson, Chunlin Xiao, Jonathan Trow, Stephen T Sherry, Alexander W Zaranek, Madeleine Ball, Jason Bobe, Preston Estep, George M Church, Patrick Marks, Sofia Kyriazopoulou-Panagiotopoulou, Grace X Y Zheng, Michael Schnall-Levin, Heather S Ordonez, Patrice A Mudivarti, Kristina Giorda, Ying Sheng, Karoline Bjarnesdatter Rypdal, Marc Salit. Sci Data 2016
Times Cited: 240



Michael A Eberle, Epameinondas Fritzilas, Peter Krusche, Morten Källberg, Benjamin L Moore, Mitchell A Bekritsky, Zamin Iqbal, Han-Yu Chuang, Sean J Humphray, Aaron L Halpern, Semyon Kruglyak, Elliott H Margulies, Gil McVean, David R Bentley. Genome Res 2017
Times Cited: 154




List of shared articles



Times cited

Set-theory based benchmarking of three different variant callers for targeted sequencing.
Jose Arturo Molina-Mora, Mariela Solano-Vargas. BMC Bioinformatics 2021
0

ReSeq simulates realistic Illumina high-throughput sequencing data.
Stephan Schmeing, Mark D Robinson. Genome Biol 2021
1

Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG).
Catherine Rehder, Lora J H Bean, David Bick, Elizabeth Chao, Wendy Chung, Soma Das, Julianne O'Daniel, Heidi Rehm, Vandana Shashi, Lisa M Vincent. Genet Med 2021
4

Evaluation of saliva as a source of accurate whole-genome and microbiome sequencing data.
Anthony F Herzig, Lourdes Velo-Suárez, Gaëlle Le Folgoc, Anne Boland, Hélène Blanché, Robert Olaso, Liana Le Roux, Christelle Delmas, Marcel Goldberg, Marie Zins,[...]. Genet Epidemiol 2021
0

NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.
Michael D Linderman, Crystal Paudyal, Musab Shakeel, William Kelley, Ali Bashir, Bruce D Gelb. Gigascience 2021
1

Founder Reconstruction Enables Scalable and Seamless Pangenomic Analysis.
Tuukka Norri, Bastien Cazaux, Saska Dönges, Daniel Valenzuela, Veli Mäkinen. Bioinformatics 2021
0

Creation of an Expert Curated Variant List for Clinical Genomic Test Development and Validation: A ClinGen and GeT-RM Collaborative Project.
Emma Wilcox, Steven M Harrison, Edward Lockhart, Karl Voelkerding, Ira M Lubin, Heidi L Rehm, Lisa V Kalman, Birgit Funke. J Mol Diagn 2021
0

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Matteo Chiara, Federico Zambelli, Ernesto Picardi, David S Horner, Graziano Pesole. Brief Bioinform 2020
2

Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.
Weichen Zhou, Sarah B Emery, Diane A Flasch, Yifan Wang, Kenneth Y Kwan, Jeffrey M Kidd, John V Moran, Ryan E Mills. Nucleic Acids Res 2020
24

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines.
Stephen J Bush, Dona Foster, David W Eyre, Emily L Clark, Nicola De Maio, Liam P Shaw, Nicole Stoesser, Tim E A Peto, Derrick W Crook, A Sarah Walker. Gigascience 2020
26

Targeted nanopore sequencing with Cas9-guided adapter ligation.
Timothy Gilpatrick, Isac Lee, James E Graham, Etienne Raimondeau, Rebecca Bowen, Andrew Heron, Bradley Downs, Saraswati Sukumar, Fritz J Sedlazeck, Winston Timp. Nat Biotechnol 2020
62

dv-trio: a family-based variant calling pipeline using DeepVariant.
Eddie K K Ip, Clinton Hadinata, Joshua W K Ho, Eleni Giannoulatou. Bioinformatics 2020
2

Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels.
Gerrald A Lodewijk, Diana P Fernandes, Iraklis Vretzakis, Jeanne E Savage, Frank M J Jacobs. Mol Biol Evol 2020
3

Bioinformatics in Clinical Genomic Sequencing.
Matthew S Lebo, Limin Hao, Chiao-Feng Lin, Arti Singh. Clin Lab Med 2020
0

URMAP, an ultra-fast read mapper.
Robert Edgar. PeerJ 2020
1

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Arang Rhie, Brian P Walenz, Sergey Koren, Adam M Phillippy. Genome Biol 2020
39

Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets.
Emily Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K Nyquist, Alex K Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger. Nat Commun 2020
4

A diploid assembly-based benchmark for variants in the major histocompatibility complex.
Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate,[...]. Nat Commun 2020
11