A citation-based method for searching scientific literature

Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E Mason, Noah Alexander, Elizabeth Henaff, Alexa B R McIntyre, Dhruva Chandramohan, Feng Chen, Erich Jaeger, Ali Moshrefi, Khoa Pham, William Stedman, Tiffany Liang, Michael Saghbini, Zeljko Dzakula, Alex Hastie, Han Cao, Gintaras Deikus, Eric Schadt, Robert Sebra, Ali Bashir, Rebecca M Truty, Christopher C Chang, Natali Gulbahce, Keyan Zhao, Srinka Ghosh, Fiona Hyland, Yutao Fu, Mark Chaisson, Chunlin Xiao, Jonathan Trow, Stephen T Sherry, Alexander W Zaranek, Madeleine Ball, Jason Bobe, Preston Estep, George M Church, Patrick Marks, Sofia Kyriazopoulou-Panagiotopoulou, Grace X Y Zheng, Michael Schnall-Levin, Heather S Ordonez, Patrice A Mudivarti, Kristina Giorda, Ying Sheng, Karoline Bjarnesdatter Rypdal, Marc Salit. Sci Data 2016
Times Cited: 240



Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O'Grady, Hugh E Olsen, Brent S Pedersen, Arang Rhie, Hollian Richardson, Aaron R Quinlan, Terrance P Snutch, Louise Tee, Benedict Paten, Adam M Phillippy, Jared T Simpson, Nicholas J Loman, Matthew Loose. Nat Biotechnol 2018
Times Cited: 627




List of shared articles



Times cited

Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase.
Vahid Akbari, Jean-Michel Garant, Kieran O'Neill, Pawan Pandoh, Richard Moore, Marco A Marra, Martin Hirst, Steven J M Jones. Genome Biol 2021
3

Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG).
Catherine Rehder, Lora J H Bean, David Bick, Elizabeth Chao, Wendy Chung, Soma Das, Julianne O'Daniel, Heidi Rehm, Vandana Shashi, Lisa M Vincent. Genet Med 2021
4

Cas9 targeted enrichment of mobile elements using nanopore sequencing.
Torrin L McDonald, Weichen Zhou, Christopher P Castro, Camille Mumm, Jessica A Switzenberg, Ryan E Mills, Alan P Boyle. Nat Commun 2021
1

Haplotype diversity and sequence heterogeneity of human telomeres.
Kirill Grigorev, Jonathan Foox, Daniela Bezdan, Daniel Butler, Jared J Luxton, Jake Reed, Miles J McKenna, Lynn Taylor, Kerry A George, Cem Meydan,[...]. Genome Res 2021
1


100 Years of evolving gene-disease complexities and scientific debutants.
Saman Zeeshan, Ruoyun Xiong, Bruce T Liang, Zeeshan Ahmed. Brief Bioinform 2020
7

Structural variation in the sequencing era.
Steve S Ho, Alexander E Urban, Ryan E Mills. Nat Rev Genet 2020
67

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Matteo Chiara, Federico Zambelli, Ernesto Picardi, David S Horner, Graziano Pesole. Brief Bioinform 2020
2

Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.
Weichen Zhou, Sarah B Emery, Diane A Flasch, Yifan Wang, Kenneth Y Kwan, Jeffrey M Kidd, John V Moran, Ryan E Mills. Nucleic Acids Res 2020
24

Genotyping structural variants in pangenome graphs using the vg toolkit.
Glenn Hickey, David Heller, Jean Monlong, Jonas A Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T Dawson, Erik Garrison, Adam M Novak, Benedict Paten. Genome Biol 2020
34

Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Shujun Ou, Jianing Liu, Kapeel M Chougule, Arkarachai Fungtammasan, Arun S Seetharam, Joshua C Stein, Victor Llaca, Nancy Manchanda, Amanda M Gilbert, Sharon Wei,[...]. Nat Commun 2020
14

SVJedi: genotyping structural variations with long reads.
Lolita Lecompte, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre. Bioinformatics 2020
1

A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin, Chunlin Xiao, Stephen Sherry, Sergey Koren, Adam M Phillippy, Paul C Boutros,[...]. Nat Biotechnol 2020
44

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.
Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E Olsen, Colleen Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas Maurer, Sergey Koren,[...]. Nat Biotechnol 2020
70

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon, Robert Grothe, Karen H Miga, Evan E Eichler, Adam M Phillippy, Sergey Koren. Genome Res 2020
55

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Arang Rhie, Brian P Walenz, Sergey Koren, Adam M Phillippy. Genome Biol 2020
39

A diploid assembly-based benchmark for variants in the major histocompatibility complex.
Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate,[...]. Nat Commun 2020
11


Impact of lossy compression of nanopore raw signal data on basecalling and consensus accuracy
Shubham Chandak, Tatwawadi Tatwawadi, Srivatsan Sridhar, Tsachy Weissman. Bioinformatics 2020
1

Selective single molecule sequencing and assembly of a human Y chromosome of African origin.
Lukas F K Kuderna, Esther Lizano, Eva Julià, Jessica Gomez-Garrido, Aitor Serres-Armero, Martin Kuhlwilm, Regina Antoni Alandes, Marina Alvarez-Estape, David Juan, Heath Simon,[...]. Nat Commun 2019
27