A citation-based method for searching scientific literature

Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, Douglas A Melton, Itai Yanai. Cell Syst 2016
Times Cited: 400



Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck, John J Trombetta, David A Weitz, Joshua R Sanes, Alex K Shalek, Aviv Regev, Steven A McCarroll. Cell 2015
Times Cited: 2684




List of shared articles



Times cited

Deep feature extraction of single-cell transcriptomes by generative adversarial network.
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R Rabiee, Yue Li. Bioinformatics 2021
2

Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.
Chenling Xu, Romain Lopez, Edouard Mehlman, Jeffrey Regier, Michael I Jordan, Nir Yosef. Mol Syst Biol 2021
10

Fast and precise single-cell data analysis using a hierarchical autoencoder.
Duc Tran, Hung Nguyen, Bang Tran, Carlo La Vecchia, Hung N Luu, Tin Nguyen. Nat Commun 2021
3

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data.
Brian B Nadel, David Lopez, Dennis J Montoya, Feiyang Ma, Hannah Waddel, Misha M Khan, Serghei Mangul, Matteo Pellegrini. Gigascience 2021
4

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes.
Dustin J Sokolowski, Mariela Faykoo-Martinez, Lauren Erdman, Huayun Hou, Cadia Chan, Helen Zhu, Melissa M Holmes, Anna Goldenberg, Michael D Wilson. NAR Genom Bioinform 2021
1

How to Get Started with Single Cell RNA Sequencing Data Analysis.
Michael S Balzer, Ziyuan Ma, Jianfu Zhou, Amin Abedini, Katalin Susztak. J Am Soc Nephrol 2021
1

Modeling plasticity and dysplasia of pancreatic ductal organoids derived from human pluripotent stem cells.
Markus Breunig, Jessica Merkle, Martin Wagner, Michael K Melzer, Thomas F E Barth, Thomas Engleitner, Johannes Krumm, Sandra Wiedenmann, Christian M Cohrs, Lukas Perkhofer,[...]. Cell Stem Cell 2021
10

Bayesian inference of gene expression states from single-cell RNA-seq data.
Jérémie Breda, Mihaela Zavolan, Erik van Nimwegen. Nat Biotechnol 2021
1

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Single-cell RNA sequencing of human liver reveals hepatic stellate cell heterogeneity.
Valéry L Payen, Arnaud Lavergne, Niki Alevra Sarika, Megan Colonval, Latifa Karim, Manon Deckers, Mustapha Najimi, Wouter Coppieters, Benoît Charloteaux, Etienne M Sokal,[...]. JHEP Rep 2021
5




A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets.
Deeksha Doddahonnaiah, Patrick J Lenehan, Travis K Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg,[...]. Genes (Basel) 2021
0

scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling.
Dongyuan Song, Kexin Li, Zachary Hemminger, Roy Wollman, Jingyi Jessica Li. Bioinformatics 2021
0