A citation-based method for searching scientific literature

Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, Douglas A Melton, Itai Yanai. Cell Syst 2016
Times Cited: 400



Åsa Segerstolpe, Athanasia Palasantza, Pernilla Eliasson, Eva-Marie Andersson, Anne-Christine Andréasson, Xiaoyan Sun, Simone Picelli, Alan Sabirsh, Maryam Clausen, Magnus K Bjursell, David M Smith, Maria Kasper, Carina Ämmälä, Rickard Sandberg. Cell Metab 2016
Times Cited: 542




List of shared articles



Times cited

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references.
Meichen Dong, Aatish Thennavan, Eugene Urrutia, Yun Li, Charles M Perou, Fei Zou, Yuchao Jiang. Brief Bioinform 2021
20

Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas.
Luca Tosti, Yan Hang, Olivia Debnath, Sebastian Tiesmeyer, Timo Trefzer, Katja Steiger, Foo Wei Ten, Sören Lukassen, Simone Ballke, Anja A Kühl,[...]. Gastroenterology 2021
20

Single Cell Nuclear Sequencing of Healthy and Diseased Pancreas: The Coming-of-Age of Single Nucleus RNA Sequencing.
Harrys Kishore Charles Jacob, Shweta Lavania, Ashok Kumar Saluja. Gastroenterology 2021
0

SIX2 and SIX3 coordinately regulate functional maturity and fate of human pancreatic β cells.
Romina J Bevacqua, Jonathan Y Lam, Heshan Peiris, Robert L Whitener, Seokho Kim, Xueying Gu, Mollie S H Friedlander, Seung K Kim. Genes Dev 2021
8

Importance of Both Imprinted Genes and Functional Heterogeneity in Pancreatic Beta Cells: Is There a Link?
Pauline Chabosseau, Guy A Rutter, Steven J Millership. Int J Mol Sci 2021
0

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench.
Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev, Martin Hemberg. Nucleic Acids Res 2021
6

Pancreatic β-cell heterogeneity in health and diabetes: classes, sources, and subtypes.
Mario A Miranda, Juan F Macias-Velasco, Heather A Lawson. Am J Physiol Endocrinol Metab 2021
3

Fast and precise single-cell data analysis using a hierarchical autoencoder.
Duc Tran, Hung Nguyen, Bang Tran, Carlo La Vecchia, Hung N Luu, Tin Nguyen. Nat Commun 2021
3

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data.
Brian B Nadel, David Lopez, Dennis J Montoya, Feiyang Ma, Hannah Waddel, Misha M Khan, Serghei Mangul, Matteo Pellegrini. Gigascience 2021
4


Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration.
Weixu Wang, Huanhuan Tan, Mingwan Sun, Yiqing Han, Wei Chen, Shengnu Qiu, Ke Zheng, Gang Wei, Ting Ni. Nucleic Acids Res 2021
2


Conventional and Unconventional Mechanisms by which Exocytosis Proteins Oversee β-cell Function and Protection.
Diti Chatterjee Bhowmick, Miwon Ahn, Eunjin Oh, Rajakrishnan Veluthakal, Debbie C Thurmond. Int J Mol Sci 2021
0

Single Molecule-Based fliFISH Validates Radial and Heterogeneous Gene Expression Patterns in Pancreatic Islet β-Cells.
Fangjia Li, Dehong Hu, Cailin Dieter, Charles Ansong, Lori Sussel, Galya Orr. Diabetes 2021
0

TCF7 is not essential for glucose homeostasis in mice.
Kiran Deep Kaur, Chi Kin Wong, Laurie L Baggio, Jacqueline L Beaudry, Shai Fuchs, Brandon L Panaro, Dianne Matthews, Xiemin Cao, Daniel J Drucker. Mol Metab 2021
0

Insights from single cell studies of human pancreatic islets and stem cell-derived islet cells to guide functional beta cell maturation in vitro.
Natasha Hui Jin Ng, Claire Wen Ying Neo, Shirley Suet Lee Ding, Adrian Kee Keong Teo. Vitam Horm 2021
0


Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk.
Joshua Chiou, Chun Zeng, Zhang Cheng, Jee Yun Han, Michael Schlichting, Michael Miller, Robert Mendez, Serina Huang, Jinzhao Wang, Yinghui Sui,[...]. Nat Genet 2021
9

Islet Regeneration: Endogenous and Exogenous Approaches.
Fiona M Docherty, Lori Sussel. Int J Mol Sci 2021
1

Human Pluripotent Stem Cells to Model Islet Defects in Diabetes.
Diego Balboa, Diepiriye G Iworima, Timothy J Kieffer. Front Endocrinol (Lausanne) 2021
3

The Human Islet: Mini-Organ With Mega-Impact.
John T Walker, Diane C Saunders, Marcela Brissova, Alvin C Powers. Endocr Rev 2021
3

Iterative single-cell multi-omic integration using online learning.
Chao Gao, Jialin Liu, April R Kriebel, Sebastian Preissl, Chongyuan Luo, Rosa Castanon, Justin Sandoval, Angeline Rivkin, Joseph R Nery, Margarita M Behrens,[...]. Nat Biotechnol 2021
1

Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID.
Akira Cortal, Loredana Martignetti, Emmanuelle Six, Antonio Rausell. Nat Biotechnol 2021
1

Employing core regulatory circuits to define cell identity.
Nathalia Almeida, Matthew W H Chung, Elena M Drudi, Elise N Engquist, Eva Hamrud, Abigail Isaacson, Victoria S K Tsang, Fiona M Watt, Francesca M Spagnoli. EMBO J 2021
2

Improving Single-Cell RNA-seq Clustering by Integrating Pathways.
Chenxing Zhang, Lin Gao, Bingbo Wang, Yong Gao. Brief Bioinform 2021
0

Computational principles and challenges in single-cell data integration.
Ricard Argelaguet, Anna S E Cuomo, Oliver Stegle, John C Marioni. Nat Biotechnol 2021
6

Pancreatic Pseudoislets: An Organoid Archetype for Metabolism Research.
Mollie S H Friedlander, Vy M Nguyen, Seung K Kim, Romina J Bevacqua. Diabetes 2021
0

Temporal single-cell regeneration studies: the greatest thing since sliced pancreas?
Juan Domínguez-Bendala, Mirza Muhammad Fahd Qadir, Ricardo Luis Pastori. Trends Endocrinol Metab 2021
0

A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion.
Carla A Gonçalves, Michael Larsen, Sascha Jung, Johannes Stratmann, Akiko Nakamura, Marit Leuschner, Lena Hersemann, Rashmiparvathi Keshara, Signe Perlman, Lene Lundvall,[...]. Nat Commun 2021
2

Integrating multiple references for single-cell assignment.
Bin Duan, Shaoqi Chen, Xiaohan Chen, Chenyu Zhu, Chen Tang, Shuguang Wang, Yicheng Gao, Shaliu Fu, Qi Liu. Nucleic Acids Res 2021
0


Diastolic dysfunction in a pre-clinical model of diabetes is associated with changes in the cardiac non-myocyte cellular composition.
Charles D Cohen, Miles J De Blasio, Man K S Lee, Gabriella E Farrugia, Darnel Prakoso, Crisdion Krstevski, Minh Deo, Daniel G Donner, Helen Kiriazis, Michelle C Flynn,[...]. Cardiovasc Diabetol 2021
1

SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment.
Chien-Ting Wu, Peter V Lidsky, Yinghong Xiao, Ivan T Lee, Ran Cheng, Tsuguhisa Nakayama, Sizun Jiang, Janos Demeter, Romina J Bevacqua, Charles A Chang,[...]. Cell Metab 2021
19

SARS-CoV-2 infection induces beta cell transdifferentiation.
Xuming Tang, Skyler Uhl, Tuo Zhang, Dongxiang Xue, Bo Li, J Jeya Vandana, Joshua A Acklin, Lori L Bonnycastle, Narisu Narisu, Michael R Erdos,[...]. Cell Metab 2021
15

scDA: Single cell discriminant analysis for single-cell RNA sequencing data.
Qianqian Shi, Xinxing Li, Qirui Peng, Chuanchao Zhang, Luonan Chen. Comput Struct Biotechnol J 2021
0


A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets.
Deeksha Doddahonnaiah, Patrick J Lenehan, Travis K Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg,[...]. Genes (Basel) 2021
0

Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.
Stephan Fischer, Megan Crow, Benjamin D Harris, Jesse Gillis. Nat Protoc 2021
0

Single-cell classification using graph convolutional networks.
Tianyu Wang, Jun Bai, Sheida Nabavi. BMC Bioinformatics 2021
0

Single-cell-resolved differentiation of human induced pluripotent stem cells into pancreatic duct-like organoids on a microwell chip.
Sandra Wiedenmann, Markus Breunig, Jessica Merkle, Christine von Toerne, Tihomir Georgiev, Michel Moussus, Lucas Schulte, Thomas Seufferlein, Michael Sterr, Heiko Lickert,[...]. Nat Biomed Eng 2021
4

SARS-CoV-2 infection of the pancreas promotes thrombofibrosis and is associated with new-onset diabetes.
Mirza Muhammad Fahd Qadir, Manika Bhondeley, Wandy Beatty, Dina D Gaupp, Lara A Doyle-Meyers, Tracy Fischer, Ishitri Bandyopadhyay, Robert V Blair, Rudolf Bohm, Jay Rappaport,[...]. JCI Insight 2021
1


High Coexpression of the Ghrelin and LEAP2 Receptor GHSR With Pancreatic Polypeptide in Mouse and Human Islets.
Deepali Gupta, Georgina K C Dowsett, Bharath K Mani, Kripa Shankar, Sherri Osborne-Lawrence, Nathan P Metzger, Brian Y H Lam, Giles S H Yeo, Jeffrey M Zigman. Endocrinology 2021
1


Using single-nucleus RNA-sequencing to interrogate transcriptomic profiles of archived human pancreatic islets.
Giorgio Basile, Sevim Kahraman, Ercument Dirice, Hui Pan, Jonathan M Dreyfuss, Rohit N Kulkarni. Genome Med 2021
0