A citation-based method for searching scientific literature

Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, Douglas A Melton, Itai Yanai. Cell Syst 2016
Times Cited: 400



Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green, Martin Hemberg. Nat Methods 2017
Times Cited: 462




List of shared articles



Times cited


ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data.
Johannes Smolander, Sini Junttila, Mikko S Venäläinen, Laura L Elo. Bioinformatics 2021
1

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench.
Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev, Martin Hemberg. Nucleic Acids Res 2021
6


Fast and precise single-cell data analysis using a hierarchical autoencoder.
Duc Tran, Hung Nguyen, Bang Tran, Carlo La Vecchia, Hung N Luu, Tin Nguyen. Nat Commun 2021
3

Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration.
Weixu Wang, Huanhuan Tan, Mingwan Sun, Yiqing Han, Wei Chen, Shengnu Qiu, Ke Zheng, Gang Wei, Ting Ni. Nucleic Acids Res 2021
2


WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition.
Yinlei Hu, Bin Li, Wen Zhang, Nianping Liu, Pengfei Cai, Falai Chen, Kun Qu. Brief Bioinform 2021
1

Improving Single-Cell RNA-seq Clustering by Integrating Pathways.
Chenxing Zhang, Lin Gao, Bingbo Wang, Yong Gao. Brief Bioinform 2021
0


Cell type hierarchy reconstruction via reconciliation of multi-resolution cluster tree.
Minshi Peng, Brie Wamsley, Andrew G Elkins, Daniel H Geschwind, Yuting Wei, Kathryn Roeder. Nucleic Acids Res 2021
0

scDA: Single cell discriminant analysis for single-cell RNA sequencing data.
Qianqian Shi, Xinxing Li, Qirui Peng, Chuanchao Zhang, Luonan Chen. Comput Struct Biotechnol J 2021
0

Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
10

Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.
Stephan Fischer, Megan Crow, Benjamin D Harris, Jesse Gillis. Nat Protoc 2021
0


scGPS: Determining Cell States and Global Fate Potential of Subpopulations.
Michael Thompson, Maika Matsumoto, Tianqi Ma, Anne Senabouth, Nathan J Palpant, Joseph E Powell, Quan Nguyen. Front Genet 2021
0