A citation-based method for searching scientific literature

Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein, Douglas A Melton, Itai Yanai. Cell Syst 2016
Times Cited: 400



Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
Times Cited: 474




List of shared articles



Times cited

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references.
Meichen Dong, Aatish Thennavan, Eugene Urrutia, Yun Li, Charles M Perou, Fei Zou, Yuchao Jiang. Brief Bioinform 2021
20

Deep feature extraction of single-cell transcriptomes by generative adversarial network.
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R Rabiee, Yue Li. Bioinformatics 2021
2

Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.
Chenling Xu, Romain Lopez, Edouard Mehlman, Jeffrey Regier, Michael I Jordan, Nir Yosef. Mol Syst Biol 2021
10

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench.
Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev, Martin Hemberg. Nucleic Acids Res 2021
6

iMAP: integration of multiple single-cell datasets by adversarial paired transfer networks.
Dongfang Wang, Siyu Hou, Lei Zhang, Xiliang Wang, Baolin Liu, Zemin Zhang. Genome Biol 2021
0


Applications of single-cell and bulk RNA sequencing in onco-immunology.
Maria Kuksin, Daphné Morel, Marine Aglave, François-Xavier Danlos, Aurélien Marabelle, Andrei Zinovyev, Daniel Gautheret, Loïc Verlingue. Eur J Cancer 2021
2

Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID.
Akira Cortal, Loredana Martignetti, Emmanuelle Six, Antonio Rausell. Nat Biotechnol 2021
1

Computational principles and challenges in single-cell data integration.
Ricard Argelaguet, Anna S E Cuomo, Oliver Stegle, John C Marioni. Nat Biotechnol 2021
6

Mapping single-cell atlases throughout Metazoa unravels cell type evolution.
Alexander J Tarashansky, Jacob M Musser, Margarita Khariton, Pengyang Li, Detlev Arendt, Stephen R Quake, Bo Wang. Elife 2021
5

SSBER: removing batch effect for single-cell RNA sequencing data.
Yin Zhang, Fei Wang. BMC Bioinformatics 2021
0

Temporal single-cell regeneration studies: the greatest thing since sliced pancreas?
Juan Domínguez-Bendala, Mirza Muhammad Fahd Qadir, Ricardo Luis Pastori. Trends Endocrinol Metab 2021
0

Integrating multiple references for single-cell assignment.
Bin Duan, Shaoqi Chen, Xiaohan Chen, Chenyu Zhu, Chen Tang, Shuguang Wang, Yicheng Gao, Shaliu Fu, Qi Liu. Nucleic Acids Res 2021
0


scDA: Single cell discriminant analysis for single-cell RNA sequencing data.
Qianqian Shi, Xinxing Li, Qirui Peng, Chuanchao Zhang, Luonan Chen. Comput Struct Biotechnol J 2021
0

Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
10


Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.
Stephan Fischer, Megan Crow, Benjamin D Harris, Jesse Gillis. Nat Protoc 2021
0