A citation-based method for searching scientific literature

Naomi Habib, Inbal Avraham-Davidi, Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, Sourav R Choudhury, François Aguet, Ellen Gelfand, Kristin Ardlie, David A Weitz, Orit Rozenblatt-Rosen, Feng Zhang, Aviv Regev. Nat Methods 2017
Times Cited: 321



Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Times Cited: 2430




List of shared articles



Times cited

The Power of Single-Cell Analysis for the Study of Liver Pathobiology.
Angela L Chu, Joel D Schilling, Kevin R King, Ariel E Feldstein. Hepatology 2021
2

Single-Nuclei RNA Sequencing Assessment of the Hepatic Effects of 2,3,7,8-Tetrachlorodibenzo-p-dioxin.
Rance Nault, Kelly A Fader, Sudin Bhattacharya, Tim R Zacharewski. Cell Mol Gastroenterol Hepatol 2021
4

Single-cell transcriptomic atlas of primate cardiopulmonary aging.
Shuai Ma, Shuhui Sun, Jiaming Li, Yanling Fan, Jing Qu, Liang Sun, Si Wang, Yiyuan Zhang, Shanshan Yang, Zunpeng Liu,[...]. Cell Res 2021
12

6


Single nucleus transcriptomics data integration recapitulates the major cell types in human liver.
Klev Diamanti, Juan Salvador Inda Díaz, Amanda Raine, Gang Pan, Claes Wadelius, Marco Cavalli. Hepatol Res 2021
1

Goals and approaches for each processing step for single-cell RNA sequencing data.
Zilong Zhang, Feifei Cui, Chunyu Wang, Lingling Zhao, Quan Zou. Brief Bioinform 2021
2

27-Hydroxycholesterol regulates human SLC22A12 gene expression through estrogen receptor action.
Masaya Matsubayashi, Yoshihiko M Sakaguchi, Yoshiki Sahara, Hitoki Nanaura, Sotaro Kikuchi, Arvand Asghari, Linh Bui, Shinko Kobashigawa, Mari Nakanishi, Riko Nagata,[...]. FASEB J 2021
1

Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes.
Ethan J Armand, Junhao Li, Fangming Xie, Chongyuan Luo, Eran A Mukamel. Neuron 2021
8

Induced organoids derived from patients with ulcerative colitis recapitulate colitic reactivity.
Samaneh K Sarvestani, Steven Signs, Bo Hu, Yunku Yeu, Hao Feng, Ying Ni, David R Hill, Robert C Fisher, Sylvain Ferrandon, Reece K DeHaan,[...]. Nat Commun 2021
2

Elucidating the cellular dynamics of the brain with single-cell RNA sequencing.
Aida Cardona-Alberich, Manon Tourbez, Sarah F Pearce, Christopher R Sibley. RNA Biol 2021
3

Selecting single cell clustering parameter values using subsampling-based robustness metrics.
Ryan B Patterson-Cross, Ariel J Levine, Vilas Menon. BMC Bioinformatics 2021
0

Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types.
Sara Saez-Atienzar, Sara Bandres-Ciga, Rebekah G Langston, Jonggeol J Kim, Shing Wan Choi, Regina H Reynolds, Yevgeniya Abramzon, Ramita Dewan, Sarah Ahmed, John E Landers,[...]. Sci Adv 2021
6

Single-Cell Transcriptome Profiling.
Guy Shapira, Noam Shomron. Methods Mol Biol 2021
0

A flexible microfluidic system for single-cell transcriptome profiling elucidates phased transcriptional regulators of cell cycle.
Karen Davey, Daniel Wong, Filip Konopacki, Eugene Kwa, Tony Ly, Heike Fiegler, Christopher R Sibley. Sci Rep 2021
1

Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord.
Mor R Alkaslasi, Zoe E Piccus, Sangeetha Hareendran, Hanna Silberberg, Li Chen, Yajun Zhang, Timothy J Petros, Claire E Le Pichon. Nat Commun 2021
0

Extraction of nuclei from archived postmortem tissues for single-nucleus sequencing applications.
Malosree Maitra, Corina Nagy, Anjali Chawla, Yu Chang Wang, Camila Nascimento, Matthew Suderman, Jean-François Théroux, Naguib Mechawar, Jiannis Ragoussis, Gustavo Turecki. Nat Protoc 2021
0

Single nucleus multi-omics regulatory landscape of the murine pituitary.
Frederique Ruf-Zamojski, Zidong Zhang, Michel Zamojski, Gregory R Smith, Natalia Mendelev, Hanqing Liu, German Nudelman, Mika Moriwaki, Hanna Pincas, Rosa Gomez Castanon,[...]. Nat Commun 2021
0

Altered oligodendroglia and astroglia in chronic traumatic encephalopathy.
K Blake Chancellor, Sarah E Chancellor, Joseph E Duke-Cohan, Bertrand R Huber, Thor D Stein, Victor E Alvarez, Benjamin W Okaty, Susan M Dymecki, Ann C McKee. Acta Neuropathol 2021
2

Evolutionary cell type mapping with single-cell genomics.
Amos Tanay, Arnau Sebé-Pedrós. Trends Genet 2021
0

A map of transcriptional heterogeneity and regulatory variation in human microglia.
Adam M H Young, Natsuhiko Kumasaka, Fiona Calvert, Timothy R Hammond, Andrew Knights, Nikolaos Panousis, Jun Sung Park, Jeremy Schwartzentruber, Jimmy Liu, Kousik Kundu,[...]. Nat Genet 2021
1

Plasticity and heterogeneity of thermogenic adipose tissue.
Wenfei Sun, Salvatore Modica, Hua Dong, Christian Wolfrum. Nat Metab 2021
1


Molecular characterization of projection neuron subtypes in the mouse olfactory bulb.
Sara Zeppilli, Tobias Ackels, Robin Attey, Nell Klimpert, Kimberly D Ritola, Stefan Boeing, Anton Crombach, Andreas T Schaefer, Alexander Fleischmann. Elife 2021
1

Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seq.
Brandon Lieberman, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ning He, Yen-Yi Ho, Josephine A Taverna, Tim H M Huang, Chun-Liang Chen. J Transl Genet Genom 2021
0

Stochastic gene expression drives mesophyll protoplast regeneration.
Mengxue Xu, Qingwei Du, Caihuan Tian, Ying Wang, Yuling Jiao. Sci Adv 2021
0