A citation-based method for searching scientific literature

Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O'Grady, Hugh E Olsen, Brent S Pedersen, Arang Rhie, Hollian Richardson, Aaron R Quinlan, Terrance P Snutch, Louise Tee, Benedict Paten, Adam M Phillippy, Jared T Simpson, Nicholas J Loman, Matthew Loose. Nat Biotechnol 2018
Times Cited: 716







List of shared articles



Times cited

Long-read sequencing of the zebrafish genome reorganizes genomic architecture.
Yelena Chernyavskaya, Xiaofei Zhang, Jinze Liu, Jessica Blackburn. BMC Genomics 2022
0

Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel.
Adrien Leger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Herder, Narendar Aadepu, Clara Becker, Jakob Gierten,[...]. Genome Biol 2022
0

Detecting structural variations with precise breakpoints using low-depth WGS data from a single oxford nanopore MinION flowcell.
Henry C M Leung, Huijing Yu, Yifan Zhang, Wing Sze Leung, Ivan F M Lo, Ho Ming Luk, Wai-Chun Law, Ka Kui Ma, Chak Lim Wong, Yat Sing Wong,[...]. Sci Rep 2022
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B-assembler: a circular bacterial genome assembler.
Fengyuan Huang, Li Xiao, Min Gao, Ethan J Vallely, Kevin Dybvig, T Prescott Atkinson, Ken B Waites, Zechen Chong. BMC Genomics 2022
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Genomic architecture of 5S rDNA cluster and its variations within and between species.
Qiutao Ding, Runsheng Li, Xiaoliang Ren, Lu-Yan Chan, Vincy W S Ho, Dongying Xie, Pohao Ye, Zhongying Zhao. BMC Genomics 2022
0

CoLoRd: compressing long reads.
Marek Kokot, Adam Gudyś, Heng Li, Sebastian Deorowicz. Nat Methods 2022
0

The complete sequence of a human genome.
Sergey Nurk, Sergey Koren, Arang Rhie, Mikko Rautiainen, Andrey V Bzikadze, Alla Mikheenko, Mitchell R Vollger, Nicolas Altemose, Lev Uralsky, Ariel Gershman,[...]. Science 2022
24

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Ann M Mc Cartney, Kishwar Shafin, Michael Alonge, Andrey V Bzikadze, Giulio Formenti, Arkarachai Fungtammasan, Kerstin Howe, Chirag Jain, Sergey Koren, Glennis A Logsdon,[...]. Nat Methods 2022
1

High molecular weight DNA extraction methods lead to high quality filamentous ascomycete fungal genome assemblies using Oxford Nanopore sequencing.
Celine Petersen, Trine Sørensen, Klaus R Westphal, Lavinia I Fechete, Teis E Sondergaard, Jens L Sørensen, Kåre L Nielsen. Microb Genom 2022
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Efficient assembly of nanopore reads via highly accurate and intact error correction.
Ying Chen, Fan Nie, Shang-Qian Xie, Ying-Feng Zheng, Qi Dai, Thomas Bray, Yao-Xin Wang, Jian-Feng Xing, Zhi-Jian Huang, De-Peng Wang,[...]. Nat Commun 2021
30

A comprehensive review of scaffolding methods in genome assembly.
Junwei Luo, Yawei Wei, Mengna Lyu, Zhengjiang Wu, Xiaoyan Liu, Huimin Luo, Chaokun Yan. Brief Bioinform 2021
1

Engineered yeast genomes accurately assembled from pure and mixed samples.
Joseph H Collins, Kevin W Keating, Trent R Jones, Shravani Balaji, Celeste B Marsan, Marina Çomo, Zachary J Newlon, Tom Mitchell, Bryan Bartley, Aaron Adler,[...]. Nat Commun 2021
0