A citation-based method for searching scientific literature

Aaron M Wenger, Paul Peluso, William J Rowell, Pi-Chuan Chang, Richard J Hall, Gregory T Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D Olson, Armin Töpfer, Michael Alonge, Medhat Mahmoud, Yufeng Qian, Chen-Shan Chin, Adam M Phillippy, Michael C Schatz, Gene Myers, Mark A DePristo, Jue Ruan, Tobias Marschall, Fritz J Sedlazeck, Justin M Zook, Heng Li, Sergey Koren, Andrew Carroll, David R Rank, Michael W Hunkapiller. Nat Biotechnol 2019
Times Cited: 241



Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A Pevzner. Nat Biotechnol 2019
Times Cited: 490




List of shared articles



Times cited

State-of-the-art genome inference in the human MHC.
Alexander T Dilthey. Int J Biochem Cell Biol 2021
1

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
David Porubsky, Peter Ebert, Peter A Audano, Mitchell R Vollger, William T Harvey, Pierre Marijon, Jana Ebler, Katherine M Munson, Melanie Sorensen, Arvis Sulovari,[...]. Nat Biotechnol 2021
18

Efficient hybrid de novo assembly of human genomes with WENGAN.
Alex Di Genova, Elena Buena-Atienza, Stephan Ossowski, Marie-France Sagot. Nat Biotechnol 2021
5

Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly.
Guillaume Holley, Doruk Beyter, Helga Ingimundardottir, Peter L Møller, Snædis Kristmundsdottir, Hannes P Eggertsson, Bjarni V Halldorsson. Genome Biol 2021
3

Oxford nanopore sequencing in clinical microbiology and infection diagnostics.
Dropen Sheka, Nikolay Alabi, Paul M K Gordon. Brief Bioinform 2021
1

Potential of whole-genome sequencing-based pharmacogenetic profiling.
Sylvan Manuel Caspar, Timo Schneider, Patricia Stoll, Janine Meienberg, Gabor Matyas. Pharmacogenomics 2021
1

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng, Haowen Zhang, Heng Li. Nat Methods 2021
34

Benchmarking of next and third generation sequencing technologies and their associated algorithms for de novo genome assembly.
Marios Gavrielatos, Konstantinos Kyriakidis, Demetrios A Spandidos, Ioannis Michalopoulos. Mol Med Rep 2021
1

AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads.
Shien Huang, Xinyu He, Guohua Wang, Ergude Bao. Brief Bioinform 2021
0

Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky, Marc Jan Bonder, Arvis Sulovari, Jana Ebler, Weichen Zhou, Rebecca Serra Mari,[...]. Science 2021
32

A comprehensive review of scaffolding methods in genome assembly.
Junwei Luo, Yawei Wei, Mengna Lyu, Zhengjiang Wu, Xiaoyan Liu, Huimin Luo, Chaokun Yan. Brief Bioinform 2021
1

Development of polymorphic markers in the immune gene complex loci of cattle.
K Bakshy, D Heimeier, J C Schwartz, E J Glass, S Wilkinson, R A Skuce, A R Allen, J Young, J C McClure, J B Cole,[...]. J Dairy Sci 2021
1

Comparison of long read sequencing technologies in interrogating bacteria and fly genomes.
Eric S Tvedte, Mark Gasser, Benjamin C Sparklin, Jane Michalski, Carl E Hjelmen, J Spencer Johnston, Xuechu Zhao, Robin Bromley, Luke J Tallon, Lisa Sadzewicz,[...]. G3 (Bethesda) 2021
1


Towards population-scale long-read sequencing.
Wouter De Coster, Matthias H Weissensteiner, Fritz J Sedlazeck. Nat Rev Genet 2021
2

LazyB: fast and cheap genome assembly.
Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F Stadler. Algorithms Mol Biol 2021
0

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
Nadège Guiglielmoni, Antoine Houtain, Alessandro Derzelle, Karine Van Doninck, Jean-François Flot. BMC Bioinformatics 2021
2

lra: A long read aligner for sequences and contigs.
Jingwen Ren, Mark J P Chaisson. PLoS Comput Biol 2021
1

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
Valentine Murigneux, Leah W Roberts, Brian M Forde, Minh-Duy Phan, Nguyen Thi Khanh Nhu, Adam D Irwin, Patrick N A Harris, David L Paterson, Mark A Schembri, David M Whiley,[...]. BMC Genomics 2021
0

Novel quality metrics allow identifying and generating high-quality assemblies of piRNA clusters.
Filip Wierzbicki, Florian Schwarz, Odontsetseg Cannalonga, Robert Kofler. Mol Ecol Resour 2021
0