A citation-based method for searching scientific literature




Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Times Cited: 2641




List of shared articles



Times cited

Next-generation humanized patient-derived xenograft mouse model for pre-clinical antibody studies in neuroblastoma.
Rosa Nguyen, Anand G Patel, Lyra M Griffiths, Jason Dapper, Elizabeth A Stewart, Jim Houston, Melissa Johnson, Walter J Akers, Wayne L Furman, Michael A Dyer. Cancer Immunol Immunother 2021
3

Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.
Aaron A May-Zhang, Eric Tycksen, Austin N Southard-Smith, Karen K Deal, Joseph T Benthal, Dennis P Buehler, Mike Adam, Alan J Simmons, James R Monaghan, Brittany K Matlock,[...]. Gastroenterology 2021
11

Airspace Macrophages and Monocytes Exist in Transcriptionally Distinct Subsets in Healthy Adults.
Kara J Mould, Camille M Moore, Shannon A McManus, Alexandra L McCubbrey, Jazalle D McClendon, Christine L Griesmer, Peter M Henson, William J Janssen. Am J Respir Crit Care Med 2021
13

Derivation of Airway Basal Stem Cells from Human Pluripotent Stem Cells.
Finn J Hawkins, Shingo Suzuki, Mary Lou Beermann, Cristina Barillà, Ruobing Wang, Carlos Villacorta-Martin, Andrew Berical, J C Jean, Jake Le Suer, Taylor Matte,[...]. Cell Stem Cell 2021
20

Single nucleus transcriptomics data integration recapitulates the major cell types in human liver.
Klev Diamanti, Juan Salvador Inda Díaz, Amanda Raine, Gang Pan, Claes Wadelius, Marco Cavalli. Hepatol Res 2021
1

In silico analysis of inner ear development using public whole embryonic body single-cell RNA-sequencing data.
Ryosuke Yamamoto, Hiroe Ohnishi, Koichi Omori, Norio Yamamoto. Dev Biol 2021
1


Congenital heart disease risk loci identified by genome-wide association study in European patients.
Harald Lahm, Meiwen Jia, Martina Dreßen, Felix Wirth, Nazan Puluca, Ralf Gilsbach, Bernard D Keavney, Julie Cleuziou, Nicole Beck, Olga Bondareva,[...]. J Clin Invest 2021
5

Capture of Mouse and Human Stem Cells with Features of Formative Pluripotency.
Masaki Kinoshita, Michael Barber, William Mansfield, Yingzhi Cui, Daniel Spindlow, Giuliano Giuseppe Stirparo, Sabine Dietmann, Jennifer Nichols, Austin Smith. Cell Stem Cell 2021
33

Area Postrema Cell Types that Mediate Nausea-Associated Behaviors.
Chuchu Zhang, Judith A Kaye, Zerong Cai, Yandan Wang, Sara L Prescott, Stephen D Liberles. Neuron 2021
13

Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing.
Khomgrit Morarach, Anastassia Mikhailova, Viktoria Knoflach, Fatima Memic, Rakesh Kumar, Wei Li, Patrik Ernfors, Ulrika Marklund. Nat Neurosci 2021
21

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data.
Tallulah S Andrews, Vladimir Yu Kiselev, Davis McCarthy, Martin Hemberg. Nat Protoc 2021
10

Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time.
Grace E Lidgerwood, Anne Senabouth, Casey J A Smith-Anttila, Vikkitharan Gnanasambandapillai, Dominik C Kaczorowski, Daniela Amann-Zalcenstein, Erica L Fletcher, Shalin H Naik, Alex W Hewitt, Joseph E Powell,[...]. Genomics Proteomics Bioinformatics 2021
0

Modeling Human TBX5 Haploinsufficiency Predicts Regulatory Networks for Congenital Heart Disease.
Irfan S Kathiriya, Kavitha S Rao, Giovanni Iacono, W Patrick Devine, Andrew P Blair, Swetansu K Hota, Michael H Lai, Bayardo I Garay, Reuben Thomas, Henry Z Gong,[...]. Dev Cell 2021
7

A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples.
Wanqiu Chen, Yongmei Zhao, Xin Chen, Zhaowei Yang, Xiaojiang Xu, Yingtao Bi, Vicky Chen, Jing Li, Hannah Choi, Ben Ernest,[...]. Nat Biotechnol 2021
10

Integrative single-cell transcriptome analysis reveals a subpopulation of fibroblasts associated with favorable prognosis of liver cancer patients.
Haiyang Wang, Chao Feng, Meixin Lu, Biao Zhang, Yingchen Xu, Quan Zeng, Jiafei Xi, Junnian Zhou, Xiaomin Ying, Jian Zhang,[...]. Transl Oncol 2021
0

Subcellular sequencing of single neurons reveals the dendritic transcriptome of GABAergic interneurons.
Julio D Perez, Susanne Tom Dieck, Beatriz Alvarez-Castelao, Georgi Tushev, Ivy Cw Chan, Erin M Schuman. Elife 2021
3

Spatiotemporal analysis of human intestinal development at single-cell resolution.
David Fawkner-Corbett, Agne Antanaviciute, Kaushal Parikh, Marta Jagielowicz, Ana Sousa Gerós, Tarun Gupta, Neil Ashley, Doran Khamis, Darren Fowler, Edward Morrissey,[...]. Cell 2021
19

scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets.
Hongyu Liu, N M Prashant, Liam F Spurr, Pavlos Bousounis, Nawaf Alomran, Helen Ibeawuchi, Justin Sein, Piotr Słowiński, Krasimira Tsaneva-Atanasova, Anelia Horvath. BMC Genomics 2021
2

Distinct metabolic programs established in the thymus control effector functions of γδ T cell subsets in tumor microenvironments.
Noella Lopes, Claire McIntyre, Stefania Martin, Mathilde Raverdeau, Nital Sumaria, Ayano C Kohlgruber, Gina J Fiala, Leandro Z Agudelo, Lydia Dyck, Harry Kane,[...]. Nat Immunol 2021
6

Single-Cell RNA Sequencing of Tocilizumab-Treated Peripheral Blood Mononuclear Cells as an in vitro Model of Inflammation.
Arya Zarinsefat, George Hartoularos, Dmitry Rychkov, Priyanka Rashmi, Sindhu Chandran, Flavio Vincenti, Chun J Yee, Minnie M Sarwal. Front Genet 2021
0

No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells.
Christopher S McGinnis, David A Siegel, Guorui Xie, George Hartoularos, Mars Stone, Chun J Ye, Zev J Gartner, Nadia R Roan, Sulggi A Lee. BMC Biol 2021
0

Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet+ B cells.
Roosheel S Patel, Joy E Tomlinson, Thomas J Divers, Gerlinde R Van de Walle, Brad R Rosenberg. BMC Biol 2021
3

Persistence of mature dendritic cells, TH2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade.
Christine Bangert, Katharina Rindler, Thomas Krausgruber, Natalia Alkon, Felix M Thaler, Harald Kurz, Tanya Ayub, Denis Demirtas, Nikolaus Fortelny, Vera Vorstandlechner,[...]. Sci Immunol 2021
5


Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.
Chenling Xu, Romain Lopez, Edouard Mehlman, Jeffrey Regier, Michael I Jordan, Nir Yosef. Mol Syst Biol 2021
10

MUC1-C integrates activation of the IFN-γ pathway with suppression of the tumor immune microenvironment in triple-negative breast cancer.
Nami Yamashita, Mark Long, Atsushi Fushimi, Masaaki Yamamoto, Tsuyoshi Hata, Masayuki Hagiwara, Atrayee Bhattacharya, Qiang Hu, Kwok-Kin Wong, Song Liu,[...]. J Immunother Cancer 2021
0

Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype.
Evelyn S Hanemaaijer, Thanasis Margaritis, Karin Sanders, Frank L Bos, Tito Candelli, Hanin Al-Saati, Max M van Noesel, Friederike A G Meyer-Wentrup, Marc van de Wetering, Frank C P Holstege,[...]. Proc Natl Acad Sci U S A 2021
3

Mapping the immune environment in clear cell renal carcinoma by single-cell genomics.
Nicholas Borcherding, Ajaykumar Vishwakarma, Andrew P Voigt, Andrew Bellizzi, Jacob Kaplan, Kenneth Nepple, Aliasger K Salem, Russell W Jenkins, Yousef Zakharia, Weizhou Zhang. Commun Biol 2021
8

Temporally integrated single cell RNA sequencing analysis of PBMC from experimental and natural primary human DENV-1 infections.
Adam T Waickman, Heather Friberg, Gregory D Gromowski, Wiriya Rutvisuttinunt, Tao Li, Hayden Siegfried, Kaitlin Victor, Michael K McCracken, Stefan Fernandez, Anon Srikiatkhachorn,[...]. PLoS Pathog 2021
0

Immunosuppressive Myeloid Cells Induce Nitric Oxide-Dependent DNA Damage and p53 Pathway Activation in CD8+ T Cells.
Adam N R Cartwright, Shengbao Suo, Soumya Badrinath, Sushil Kumar, Johannes Melms, Adrienne Luoma, Archis Bagati, Assieh Saadatpour, Benjamin Izar, Guo-Cheng Yuan,[...]. Cancer Immunol Res 2021
4

Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types.
Sara Saez-Atienzar, Sara Bandres-Ciga, Rebekah G Langston, Jonggeol J Kim, Shing Wan Choi, Regina H Reynolds, Yevgeniya Abramzon, Ramita Dewan, Sarah Ahmed, John E Landers,[...]. Sci Adv 2021
9

A multi-center cross-platform single-cell RNA sequencing reference dataset.
Xin Chen, Zhaowei Yang, Wanqiu Chen, Yongmei Zhao, Andrew Farmer, Bao Tran, Vyacheslav Furtak, Malcolm Moos, Wenming Xiao, Charles Wang. Sci Data 2021
2

Human marginal zone B cell development from early T2 progenitors.
Thomas J Tull, Michael J Pitcher, William Guesdon, Jacqueline H Y Siu, Cristina Lebrero-Fernández, Yuan Zhao, Nedyalko Petrov, Susanne Heck, Richard Ellis, Pawan Dhami,[...]. J Exp Med 2021
2

Identification of Novel Population-Specific Cell Subsets in Chinese Ulcerative Colitis Patients Using Single-Cell RNA Sequencing.
Guang Li, Bowen Zhang, Jianyu Hao, Xiaojing Chu, Miriam Wiestler, Markus Cornberg, Cheng-Jian Xu, Xinjuan Liu, Yang Li. Cell Mol Gastroenterol Hepatol 2021
0

Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator.
Lila Allou, Sara Balzano, Andreas Magg, Mathieu Quinodoz, Beryl Royer-Bertrand, Robert Schöpflin, Wing-Lee Chan, Carlos E Speck-Martins, Daniel Rocha Carvalho, Luciano Farage,[...]. Nature 2021
6

Proteogenomic and metabolomic characterization of human glioblastoma.
Liang-Bo Wang, Alla Karpova, Marina A Gritsenko, Jennifer E Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph H Rothstein, Runyu Hong,[...]. Cancer Cell 2021
22

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population.
Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B Gaber, Sophie H L Austin, Maria Del Mar Masdeu, Amelia Edwards, Noelia Urbán, Anna Marciniak-Czochra, François Guillemot. Cell Stem Cell 2021
7

Localized EMT reprograms glial progenitors to promote spinal cord repair.
Dana Klatt Shaw, Vishnu Muraleedharan Saraswathy, Lili Zhou, Anthony R McAdow, Brooke Burris, Emily Butka, Samantha A Morris, Sabine Dietmann, Mayssa H Mokalled. Dev Cell 2021
4

Novel risk factors for craniofacial microsomia and assessment of their utility in clinic diagnosis.
Xiaopeng Xu, Bingqing Wang, Zhuoyuan Jiang, Qi Chen, Ke Mao, Xiaofeng Shi, Chun Yan, Jintian Hu, Yan Zha, Chao Ma,[...]. Hum Mol Genet 2021
0

In vivo CRISPR screening reveals nutrient signaling processes underpinning CD8+ T cell fate decisions.
Hongling Huang, Peipei Zhou, Jun Wei, Lingyun Long, Hao Shi, Yogesh Dhungana, Nicole M Chapman, Guotong Fu, Jordy Saravia, Jana L Raynor,[...]. Cell 2021
5

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes.
Dustin J Sokolowski, Mariela Faykoo-Martinez, Lauren Erdman, Huayun Hou, Cadia Chan, Helen Zhu, Melissa M Holmes, Anna Goldenberg, Michael D Wilson. NAR Genom Bioinform 2021
1

Dual role of endothelial Myct1 in tumor angiogenesis and tumor immunity.
Ashraf Ul Kabir, Madhav Subramanian, Dong Hun Lee, Xiaoli Wang, Karen Krchma, Jun Wu, Teri Naismith, Carmen M Halabi, Ju Young Kim, Fadi E Pulous,[...]. Sci Transl Med 2021
4

Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor.
Choon Boon Sim, Belinda Phipson, Mark Ziemann, Haloom Rafehi, Richard J Mills, Kevin I Watt, Kwaku D Abu-Bonsrah, Ravi K R Kalathur, Holly K Voges, Doan T Dinh,[...]. Circulation 2021
2

Single cell transcriptomic analysis of murine lung development on hyperoxia-induced damage.
Maria Hurskainen, Ivana Mižíková, David P Cook, Noora Andersson, Chanèle Cyr-Depauw, Flore Lesage, Emmi Helle, Laurent Renesme, Robert P Jankov, Markku Heikinheimo,[...]. Nat Commun 2021
3

Spontaneously Resolved Atopic Dermatitis Shows Melanocyte and Immune Cell Activation Distinct From Healthy Control Skin.
Katharina Rindler, Thomas Krausgruber, Felix M Thaler, Natalia Alkon, Christine Bangert, Harald Kurz, Nikolaus Fortelny, Thomas B Rojahn, Constanze Jonak, Johannes Griss,[...]. Front Immunol 2021
1

How to Get Started with Single Cell RNA Sequencing Data Analysis.
Michael S Balzer, Ziyuan Ma, Jianfu Zhou, Amin Abedini, Katalin Susztak. J Am Soc Nephrol 2021
1

Single-Cell RNA Sequencing Uncovers Paracrine Functions of the Epicardial-Derived Cells in Arrhythmogenic Cardiomyopathy.
Ping Yuan, Sirisha M Cheedipudi, Leila Rouhi, Siyang Fan, Lukas Simon, Zhongming Zhao, Kui Hong, Priyatansh Gurha, Ali J Marian. Circulation 2021
3

Modelling human blastocysts by reprogramming fibroblasts into iBlastoids.
Xiaodong Liu, Jia Ping Tan, Jan Schröder, Asma Aberkane, John F Ouyang, Monika Mohenska, Sue Mei Lim, Yu B Y Sun, Joseph Chen, Guizhi Sun,[...]. Nature 2021
36

Noise regularization removes correlation artifacts in single-cell RNA-seq data preprocessing.
Ruoyu Zhang, Gurinder S Atwal, Wei Keat Lim. Patterns (N Y) 2021
2